Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4126

Experiment: Choline chloride 450 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4125 and Shewana3_4126 are separated by 75 nucleotidesShewana3_4126 and Shewana3_4127 are separated by 203 nucleotides Shewana3_4125: Shewana3_4125 - glucosamine--fructose-6-phosphate aminotransferase (RefSeq), at 4,956,555 to 4,958,384 _4125 Shewana3_4126: Shewana3_4126 - DeoR family transcriptional regulator (RefSeq), at 4,958,460 to 4,959,230 _4126 Shewana3_4127: Shewana3_4127 - TonB-dependent siderophore receptor (RefSeq), at 4,959,434 to 4,961,542 _4127 Position (kb) 4958 4959 4960Strain fitness (log2 ratio) -1 0 1 2at 4958.518 kb on - strandat 4958.576 kb on - strand, within Shewana3_4126at 4958.753 kb on - strand, within Shewana3_4126at 4958.821 kb on - strand, within Shewana3_4126at 4958.872 kb on - strand, within Shewana3_4126at 4958.879 kb on - strand, within Shewana3_4126at 4959.125 kb on - strand, within Shewana3_4126at 4959.160 kb on - strandat 4959.587 kb on - strandat 4959.635 kb on - strandat 4959.721 kb on - strand, within Shewana3_4127at 4960.017 kb on - strand, within Shewana3_4127at 4960.112 kb on + strand, within Shewana3_4127

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 450 mM
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4,958,518 - -0.0
4,958,576 - Shewana3_4126 0.15 -1.2
4,958,753 - Shewana3_4126 0.38 -0.3
4,958,821 - Shewana3_4126 0.47 -0.4
4,958,872 - Shewana3_4126 0.53 -0.7
4,958,879 - Shewana3_4126 0.54 -0.4
4,959,125 - Shewana3_4126 0.86 -0.5
4,959,160 - -0.5
4,959,587 - -0.6
4,959,635 - -0.1
4,959,721 - Shewana3_4127 0.14 +0.1
4,960,017 - Shewana3_4127 0.28 +1.7
4,960,112 + Shewana3_4127 0.32 +2.0

Or see this region's nucleotide sequence