Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3347

Experiment: Choline chloride 450 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3345 and Shewana3_3346 are separated by 67 nucleotidesShewana3_3346 and Shewana3_3347 overlap by 8 nucleotidesShewana3_3347 and Shewana3_3348 are separated by 166 nucleotides Shewana3_3345: Shewana3_3345 - hypothetical protein (RefSeq), at 4,014,269 to 4,014,793 _3345 Shewana3_3346: Shewana3_3346 - hypothetical protein (RefSeq), at 4,014,861 to 4,015,409 _3346 Shewana3_3347: Shewana3_3347 - transcriptional regulator (RefSeq), at 4,015,402 to 4,016,151 _3347 Shewana3_3348: Shewana3_3348 - Na+/H+ antiporter (RefSeq), at 4,016,318 to 4,017,787 _3348 Position (kb) 4015 4016 4017Strain fitness (log2 ratio) -1 0 1at 4014.415 kb on - strand, within Shewana3_3345at 4014.566 kb on - strand, within Shewana3_3345at 4014.920 kb on + strand, within Shewana3_3346at 4015.132 kb on + strand, within Shewana3_3346at 4015.151 kb on + strand, within Shewana3_3346at 4015.327 kb on - strand, within Shewana3_3346at 4015.589 kb on + strand, within Shewana3_3347at 4015.601 kb on + strand, within Shewana3_3347at 4015.756 kb on - strand, within Shewana3_3347at 4015.999 kb on + strand, within Shewana3_3347at 4016.007 kb on - strand, within Shewana3_3347at 4016.426 kb on + strandat 4016.534 kb on + strand, within Shewana3_3348at 4016.670 kb on - strand, within Shewana3_3348at 4016.685 kb on + strand, within Shewana3_3348at 4016.716 kb on - strand, within Shewana3_3348at 4016.749 kb on + strand, within Shewana3_3348at 4016.844 kb on + strand, within Shewana3_3348

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 450 mM
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4,014,415 - Shewana3_3345 0.28 +1.4
4,014,566 - Shewana3_3345 0.57 +1.2
4,014,920 + Shewana3_3346 0.11 +0.4
4,015,132 + Shewana3_3346 0.49 -0.1
4,015,151 + Shewana3_3346 0.53 +0.1
4,015,327 - Shewana3_3346 0.85 +0.5
4,015,589 + Shewana3_3347 0.25 -0.2
4,015,601 + Shewana3_3347 0.27 +1.3
4,015,756 - Shewana3_3347 0.47 +1.3
4,015,999 + Shewana3_3347 0.80 -0.5
4,016,007 - Shewana3_3347 0.81 +1.0
4,016,426 + -0.7
4,016,534 + Shewana3_3348 0.15 +1.1
4,016,670 - Shewana3_3348 0.24 -1.3
4,016,685 + Shewana3_3348 0.25 +0.0
4,016,716 - Shewana3_3348 0.27 -0.3
4,016,749 + Shewana3_3348 0.29 +1.1
4,016,844 + Shewana3_3348 0.36 +0.4

Or see this region's nucleotide sequence