Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2854

Experiment: Choline chloride 450 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2853 and Shewana3_2854 are separated by 255 nucleotidesShewana3_2854 and Shewana3_2855 overlap by 4 nucleotidesShewana3_2855 and Shewana3_2856 are separated by 132 nucleotides Shewana3_2853: Shewana3_2853 - hypothetical protein (RefSeq), at 3,414,062 to 3,414,871 _2853 Shewana3_2854: Shewana3_2854 - hypothetical protein (RefSeq), at 3,415,127 to 3,415,369 _2854 Shewana3_2855: Shewana3_2855 - hypothetical protein (RefSeq), at 3,415,366 to 3,415,866 _2855 Shewana3_2856: Shewana3_2856 - cyclic nucleotide-binding protein (RefSeq), at 3,415,999 to 3,416,607 _2856 Position (kb) 3415 3416Strain fitness (log2 ratio) -2 -1 0 1 2at 3414.287 kb on + strand, within Shewana3_2853at 3414.358 kb on - strand, within Shewana3_2853at 3414.372 kb on - strand, within Shewana3_2853at 3414.451 kb on - strand, within Shewana3_2853at 3414.660 kb on - strand, within Shewana3_2853at 3414.737 kb on + strand, within Shewana3_2853at 3414.826 kb on + strandat 3414.845 kb on - strandat 3414.937 kb on - strandat 3414.962 kb on + strandat 3415.157 kb on + strand, within Shewana3_2854at 3415.324 kb on - strand, within Shewana3_2854at 3415.324 kb on - strand, within Shewana3_2854at 3415.479 kb on + strand, within Shewana3_2855at 3415.849 kb on - strandat 3415.859 kb on - strandat 3415.875 kb on + strandat 3416.146 kb on - strand, within Shewana3_2856at 3416.149 kb on - strand, within Shewana3_2856at 3416.284 kb on - strand, within Shewana3_2856

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 450 mM
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3,414,287 + Shewana3_2853 0.28 -0.2
3,414,358 - Shewana3_2853 0.37 -2.4
3,414,372 - Shewana3_2853 0.38 -2.4
3,414,451 - Shewana3_2853 0.48 +0.2
3,414,660 - Shewana3_2853 0.74 -1.0
3,414,737 + Shewana3_2853 0.83 +0.8
3,414,826 + -0.2
3,414,845 - -0.0
3,414,937 - +0.3
3,414,962 + +0.8
3,415,157 + Shewana3_2854 0.12 -0.6
3,415,324 - Shewana3_2854 0.81 +1.0
3,415,324 - Shewana3_2854 0.81 +1.8
3,415,479 + Shewana3_2855 0.23 +2.6
3,415,849 - +0.3
3,415,859 - +2.5
3,415,875 + -0.8
3,416,146 - Shewana3_2856 0.24 +0.8
3,416,149 - Shewana3_2856 0.25 +0.8
3,416,284 - Shewana3_2856 0.47 -2.7

Or see this region's nucleotide sequence