Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2701

Experiment: Choline chloride 450 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2700 and Shewana3_2701 are separated by 5 nucleotidesShewana3_2701 and Shewana3_2702 are separated by 12 nucleotides Shewana3_2700: Shewana3_2700 - tagatose-bisphosphate aldolase noncatalytic subunit (RefSeq), at 3,226,474 to 3,227,760 _2700 Shewana3_2701: Shewana3_2701 - oxidoreductase domain-containing protein (RefSeq), at 3,227,766 to 3,229,136 _2701 Shewana3_2702: Shewana3_2702 - DeoR family transcriptional regulator (RefSeq), at 3,229,149 to 3,229,934 _2702 Position (kb) 3227 3228 3229 3230Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3227.258 kb on + strand, within Shewana3_2700at 3227.266 kb on - strand, within Shewana3_2700at 3227.335 kb on - strand, within Shewana3_2700at 3227.368 kb on + strand, within Shewana3_2700at 3227.536 kb on + strand, within Shewana3_2700at 3227.659 kb on - strandat 3227.674 kb on + strandat 3227.685 kb on + strandat 3227.905 kb on + strand, within Shewana3_2701at 3227.913 kb on - strand, within Shewana3_2701at 3227.943 kb on - strand, within Shewana3_2701at 3228.012 kb on + strand, within Shewana3_2701at 3228.066 kb on + strand, within Shewana3_2701at 3228.076 kb on + strand, within Shewana3_2701at 3228.175 kb on - strand, within Shewana3_2701at 3229.024 kb on + strandat 3229.032 kb on - strandat 3229.102 kb on - strandat 3229.351 kb on + strand, within Shewana3_2702at 3229.503 kb on + strand, within Shewana3_2702at 3229.927 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 450 mM
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3,227,258 + Shewana3_2700 0.61 +0.2
3,227,266 - Shewana3_2700 0.62 -2.9
3,227,335 - Shewana3_2700 0.67 +1.3
3,227,368 + Shewana3_2700 0.69 +0.7
3,227,536 + Shewana3_2700 0.83 +0.6
3,227,659 - -0.3
3,227,674 + -1.3
3,227,685 + +0.7
3,227,905 + Shewana3_2701 0.10 +0.7
3,227,913 - Shewana3_2701 0.11 -1.5
3,227,943 - Shewana3_2701 0.13 -1.4
3,228,012 + Shewana3_2701 0.18 +0.9
3,228,066 + Shewana3_2701 0.22 -0.3
3,228,076 + Shewana3_2701 0.23 -1.4
3,228,175 - Shewana3_2701 0.30 +1.7
3,229,024 + +0.7
3,229,032 - +1.7
3,229,102 - +0.2
3,229,351 + Shewana3_2702 0.26 +0.7
3,229,503 + Shewana3_2702 0.45 +3.3
3,229,927 + -0.6

Or see this region's nucleotide sequence