Experiment: Choline chloride 450 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2641 and ffs are separated by 51 nucleotides ffs and Shewana3_2642 are separated by 217 nucleotides Shewana3_2642 and Shewana3_2643 are separated by 205 nucleotides Shewana3_2643 and Shewana3_2644 are separated by 318 nucleotides
Shewana3_2641: Shewana3_2641 - phage integrase family protein (RefSeq), at 3,154,100 to 3,155,380
_2641
Shewana3_R0111: ffs - SRP RNA; RNA component of signal recognition particle (NCBI), at 3,155,432 to 3,155,547
ffs
Shewana3_2642: Shewana3_2642 - helix-hairpin-helix repeat-containing competence protein ComEA (RefSeq), at 3,155,765 to 3,156,130
_2642
Shewana3_2643: Shewana3_2643 - methionine gamma-lyase (RefSeq), at 3,156,336 to 3,157,529
_2643
Shewana3_2644: Shewana3_2644 - hypothetical protein (RefSeq), at 3,157,848 to 3,159,050
_2644
Position (kb)
3156
3157
3158 Strain fitness (log2 ratio)
-1
0
1 at 3155.808 kb on - strand, within Shewana3_2642 at 3155.893 kb on - strand, within Shewana3_2642 at 3155.922 kb on - strand, within Shewana3_2642 at 3156.382 kb on + strand at 3156.397 kb on - strand at 3156.533 kb on + strand, within Shewana3_2643 at 3156.666 kb on - strand, within Shewana3_2643 at 3156.718 kb on - strand, within Shewana3_2643 at 3156.887 kb on - strand, within Shewana3_2643 at 3156.917 kb on - strand, within Shewana3_2643 at 3157.185 kb on + strand, within Shewana3_2643 at 3157.322 kb on + strand, within Shewana3_2643 at 3157.341 kb on + strand, within Shewana3_2643 at 3157.349 kb on - strand, within Shewana3_2643 at 3157.392 kb on + strand, within Shewana3_2643 at 3157.521 kb on + strand at 3157.637 kb on + strand at 3157.881 kb on - strand at 3157.881 kb on - strand at 3157.957 kb on - strand at 3158.208 kb on - strand, within Shewana3_2644 at 3158.225 kb on + strand, within Shewana3_2644 at 3158.459 kb on - strand, within Shewana3_2644
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 450 mM remove 3,155,808 - Shewana3_2642 0.12 -1.0 3,155,893 - Shewana3_2642 0.35 +0.7 3,155,922 - Shewana3_2642 0.43 -1.0 3,156,382 + +0.7 3,156,397 - -1.4 3,156,533 + Shewana3_2643 0.16 +0.7 3,156,666 - Shewana3_2643 0.28 +1.0 3,156,718 - Shewana3_2643 0.32 +0.0 3,156,887 - Shewana3_2643 0.46 -0.9 3,156,917 - Shewana3_2643 0.49 +1.7 3,157,185 + Shewana3_2643 0.71 -0.3 3,157,322 + Shewana3_2643 0.83 +0.7 3,157,341 + Shewana3_2643 0.84 -1.3 3,157,349 - Shewana3_2643 0.85 -0.3 3,157,392 + Shewana3_2643 0.88 +0.7 3,157,521 + +0.1 3,157,637 + +0.7 3,157,881 - -1.0 3,157,881 - +0.3 3,157,957 - -0.5 3,158,208 - Shewana3_2644 0.30 +0.7 3,158,225 + Shewana3_2644 0.31 +0.7 3,158,459 - Shewana3_2644 0.51 +1.7
Or see this region's nucleotide sequence