Experiment: Choline chloride 450 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2605 and Shewana3_2606 are separated by 301 nucleotides Shewana3_2606 and Shewana3_2607 are separated by 98 nucleotides Shewana3_2607 and Shewana3_2608 are separated by 57 nucleotides
Shewana3_2605: Shewana3_2605 - patatin (RefSeq), at 3,109,370 to 3,110,317
_2605
Shewana3_2606: Shewana3_2606 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,110,619 to 3,111,968
_2606
Shewana3_2607: Shewana3_2607 - hypothetical protein (RefSeq), at 3,112,067 to 3,112,504
_2607
Shewana3_2608: Shewana3_2608 - hypothetical protein (RefSeq), at 3,112,562 to 3,113,071
_2608
Position (kb)
3110
3111
3112 Strain fitness (log2 ratio)
-1
0
1 at 3109.719 kb on - strand, within Shewana3_2605 at 3109.722 kb on + strand, within Shewana3_2605 at 3109.741 kb on - strand, within Shewana3_2605 at 3109.821 kb on + strand, within Shewana3_2605 at 3109.821 kb on + strand, within Shewana3_2605 at 3109.821 kb on + strand, within Shewana3_2605 at 3109.829 kb on + strand, within Shewana3_2605 at 3109.837 kb on - strand, within Shewana3_2605 at 3109.907 kb on + strand, within Shewana3_2605 at 3109.985 kb on + strand, within Shewana3_2605 at 3110.034 kb on + strand, within Shewana3_2605 at 3110.253 kb on + strand at 3110.366 kb on + strand at 3110.580 kb on + strand at 3111.988 kb on - strand at 3112.052 kb on + strand at 3112.163 kb on - strand, within Shewana3_2607 at 3112.231 kb on - strand, within Shewana3_2607 at 3112.301 kb on + strand, within Shewana3_2607 at 3112.552 kb on + strand at 3112.560 kb on - strand at 3112.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 450 mM remove 3,109,719 - Shewana3_2605 0.37 -1.1 3,109,722 + Shewana3_2605 0.37 +0.7 3,109,741 - Shewana3_2605 0.39 +0.4 3,109,821 + Shewana3_2605 0.48 +0.7 3,109,821 + Shewana3_2605 0.48 +0.7 3,109,821 + Shewana3_2605 0.48 +1.7 3,109,829 + Shewana3_2605 0.48 -0.3 3,109,837 - Shewana3_2605 0.49 -1.2 3,109,907 + Shewana3_2605 0.57 +0.1 3,109,985 + Shewana3_2605 0.65 -0.9 3,110,034 + Shewana3_2605 0.70 -0.3 3,110,253 + -0.4 3,110,366 + -0.3 3,110,580 + +0.7 3,111,988 - +0.7 3,112,052 + -0.4 3,112,163 - Shewana3_2607 0.22 +1.7 3,112,231 - Shewana3_2607 0.37 +0.7 3,112,301 + Shewana3_2607 0.53 -1.0 3,112,552 + +0.7 3,112,560 - -0.6 3,112,560 - -0.2
Or see this region's nucleotide sequence