Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2597

Experiment: Choline chloride 450 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2595 and Shewana3_2596 are separated by 138 nucleotidesShewana3_2596 and Shewana3_2597 are separated by 131 nucleotidesShewana3_2597 and Shewana3_2598 are separated by 311 nucleotidesShewana3_2598 and Shewana3_2599 are separated by 64 nucleotides Shewana3_2595: Shewana3_2595 - carbon starvation protein CstA (RefSeq), at 3,099,057 to 3,100,511 _2595 Shewana3_2596: Shewana3_2596 - hypothetical protein (RefSeq), at 3,100,650 to 3,101,018 _2596 Shewana3_2597: Shewana3_2597 - L-sorbosone dehydrogenase (SNDH) (RefSeq), at 3,101,150 to 3,102,292 _2597 Shewana3_2598: Shewana3_2598 - hypothetical protein (RefSeq), at 3,102,604 to 3,103,050 _2598 Shewana3_2599: Shewana3_2599 - hypothetical protein (RefSeq), at 3,103,115 to 3,103,984 _2599 Position (kb) 3101 3102 3103Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3100.253 kb on + strand, within Shewana3_2595at 3100.385 kb on - strandat 3100.434 kb on + strandat 3100.629 kb on + strandat 3100.637 kb on - strandat 3101.491 kb on - strand, within Shewana3_2597at 3101.515 kb on - strand, within Shewana3_2597at 3101.968 kb on + strand, within Shewana3_2597at 3102.036 kb on - strand, within Shewana3_2597at 3102.088 kb on - strand, within Shewana3_2597at 3102.266 kb on - strandat 3102.565 kb on - strandat 3102.888 kb on + strand, within Shewana3_2598at 3103.045 kb on + strandat 3103.053 kb on - strandat 3103.239 kb on - strand, within Shewana3_2599

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 450 mM
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3,100,253 + Shewana3_2595 0.82 -0.0
3,100,385 - -1.3
3,100,434 + -1.0
3,100,629 + -1.6
3,100,637 - +0.1
3,101,491 - Shewana3_2597 0.30 -2.8
3,101,515 - Shewana3_2597 0.32 +2.0
3,101,968 + Shewana3_2597 0.72 +0.7
3,102,036 - Shewana3_2597 0.78 +0.7
3,102,088 - Shewana3_2597 0.82 -0.6
3,102,266 - -0.3
3,102,565 - +0.7
3,102,888 + Shewana3_2598 0.64 +0.7
3,103,045 + -0.3
3,103,053 - -0.3
3,103,239 - Shewana3_2599 0.14 +0.7

Or see this region's nucleotide sequence