Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2535

Experiment: Choline chloride 450 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2533 and Shewana3_2534 overlap by 1 nucleotidesShewana3_2534 and Shewana3_2535 overlap by 11 nucleotidesShewana3_2535 and Shewana3_2536 are separated by 170 nucleotides Shewana3_2533: Shewana3_2533 - biopolymer transport protein ExbD/TolR (RefSeq), at 3,029,895 to 3,030,329 _2533 Shewana3_2534: Shewana3_2534 - MotA/TolQ/ExbB proton channel (RefSeq), at 3,030,329 to 3,031,015 _2534 Shewana3_2535: Shewana3_2535 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 3,031,005 to 3,031,406 _2535 Shewana3_2536: Shewana3_2536 - prolyl oligopeptidase (RefSeq), at 3,031,577 to 3,033,757 _2536 Position (kb) 3031 3032Strain fitness (log2 ratio) -1 0 1 2at 3031.033 kb on - strandat 3031.056 kb on - strand, within Shewana3_2535at 3031.056 kb on - strand, within Shewana3_2535at 3031.078 kb on - strand, within Shewana3_2535at 3031.291 kb on - strand, within Shewana3_2535at 3031.306 kb on + strand, within Shewana3_2535at 3031.360 kb on - strand, within Shewana3_2535at 3031.378 kb on - strandat 3031.644 kb on - strandat 3031.689 kb on + strandat 3031.895 kb on + strand, within Shewana3_2536at 3031.995 kb on - strand, within Shewana3_2536at 3032.028 kb on + strand, within Shewana3_2536at 3032.053 kb on + strand, within Shewana3_2536at 3032.302 kb on - strand, within Shewana3_2536

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 450 mM
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3,031,033 - +0.6
3,031,056 - Shewana3_2535 0.13 +0.6
3,031,056 - Shewana3_2535 0.13 -0.1
3,031,078 - Shewana3_2535 0.18 -0.4
3,031,291 - Shewana3_2535 0.71 -0.4
3,031,306 + Shewana3_2535 0.75 +0.6
3,031,360 - Shewana3_2535 0.88 +0.8
3,031,378 - -0.4
3,031,644 - +1.8
3,031,689 + +0.6
3,031,895 + Shewana3_2536 0.15 +0.6
3,031,995 - Shewana3_2536 0.19 +1.3
3,032,028 + Shewana3_2536 0.21 +0.6
3,032,053 + Shewana3_2536 0.22 -0.4
3,032,302 - Shewana3_2536 0.33 +1.9

Or see this region's nucleotide sequence