Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2497

Experiment: Choline chloride 450 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2496 and Shewana3_2497 are separated by 110 nucleotidesShewana3_2497 and Shewana3_2498 are separated by 90 nucleotidesShewana3_2498 and Shewana3_2499 are separated by 68 nucleotides Shewana3_2496: Shewana3_2496 - hypothetical protein (RefSeq), at 2,986,731 to 2,987,603 _2496 Shewana3_2497: Shewana3_2497 - aminoglycoside phosphotransferase (RefSeq), at 2,987,714 to 2,989,018 _2497 Shewana3_2498: Shewana3_2498 - nicotinamide mononucleotide transporter PnuC (RefSeq), at 2,989,109 to 2,989,774 _2498 Shewana3_2499: Shewana3_2499 - hypothetical protein (RefSeq), at 2,989,843 to 2,990,103 _2499 Position (kb) 2987 2988 2989 2990Strain fitness (log2 ratio) -1 0 1 2at 2986.737 kb on - strandat 2986.936 kb on - strand, within Shewana3_2496at 2986.947 kb on - strand, within Shewana3_2496at 2986.973 kb on + strand, within Shewana3_2496at 2986.988 kb on + strand, within Shewana3_2496at 2986.988 kb on + strand, within Shewana3_2496at 2986.988 kb on + strand, within Shewana3_2496at 2986.996 kb on - strand, within Shewana3_2496at 2987.042 kb on + strand, within Shewana3_2496at 2987.521 kb on - strandat 2987.615 kb on + strandat 2987.760 kb on + strandat 2987.866 kb on + strand, within Shewana3_2497at 2987.880 kb on - strand, within Shewana3_2497at 2987.900 kb on + strand, within Shewana3_2497at 2987.900 kb on - strand, within Shewana3_2497at 2987.936 kb on - strand, within Shewana3_2497at 2987.993 kb on + strand, within Shewana3_2497at 2988.136 kb on - strand, within Shewana3_2497at 2988.246 kb on - strand, within Shewana3_2497at 2988.319 kb on - strand, within Shewana3_2497at 2988.347 kb on - strand, within Shewana3_2497at 2989.393 kb on - strand, within Shewana3_2498at 2989.624 kb on - strand, within Shewana3_2498at 2989.676 kb on + strand, within Shewana3_2498at 2989.751 kb on - strandat 2989.776 kb on + strandat 2989.854 kb on + strandat 2989.930 kb on - strand, within Shewana3_2499at 2989.942 kb on - strand, within Shewana3_2499

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 450 mM
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2,986,737 - +0.6
2,986,936 - Shewana3_2496 0.23 -1.3
2,986,947 - Shewana3_2496 0.25 -1.4
2,986,973 + Shewana3_2496 0.28 +0.6
2,986,988 + Shewana3_2496 0.29 +0.6
2,986,988 + Shewana3_2496 0.29 +0.6
2,986,988 + Shewana3_2496 0.29 +0.6
2,986,996 - Shewana3_2496 0.30 +1.9
2,987,042 + Shewana3_2496 0.36 +0.6
2,987,521 - +0.6
2,987,615 + +0.3
2,987,760 + +0.6
2,987,866 + Shewana3_2497 0.12 +0.6
2,987,880 - Shewana3_2497 0.13 -0.4
2,987,900 + Shewana3_2497 0.14 +1.6
2,987,900 - Shewana3_2497 0.14 +0.6
2,987,936 - Shewana3_2497 0.17 +0.6
2,987,993 + Shewana3_2497 0.21 +0.6
2,988,136 - Shewana3_2497 0.32 +0.0
2,988,246 - Shewana3_2497 0.41 +1.8
2,988,319 - Shewana3_2497 0.46 -0.4
2,988,347 - Shewana3_2497 0.49 +2.5
2,989,393 - Shewana3_2498 0.43 +0.6
2,989,624 - Shewana3_2498 0.77 -0.8
2,989,676 + Shewana3_2498 0.85 +0.6
2,989,751 - -1.1
2,989,776 + +0.6
2,989,854 + -0.4
2,989,930 - Shewana3_2499 0.33 +0.6
2,989,942 - Shewana3_2499 0.38 +0.6

Or see this region's nucleotide sequence