Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1892

Experiment: Choline chloride 450 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1890 and Shewana3_1891 overlap by 50 nucleotidesShewana3_1891 and Shewana3_1892 are separated by 312 nucleotidesShewana3_1892 and Shewana3_1893 are separated by 109 nucleotides Shewana3_1890: Shewana3_1890 - hypothetical protein (RefSeq), at 2,240,629 to 2,241,177 _1890 Shewana3_1891: Shewana3_1891 - hypothetical protein (RefSeq), at 2,241,128 to 2,241,562 _1891 Shewana3_1892: Shewana3_1892 - 50S ribosomal protein L25P (RefSeq), at 2,241,875 to 2,242,162 _1892 Shewana3_1893: Shewana3_1893 - hypothetical protein (RefSeq), at 2,242,272 to 2,246,621 _1893 Position (kb) 2241 2242 2243Strain fitness (log2 ratio) -1 0 1 2at 2240.992 kb on + strand, within Shewana3_1890at 2241.071 kb on + strand, within Shewana3_1890at 2241.481 kb on - strand, within Shewana3_1891at 2241.616 kb on + strandat 2242.251 kb on + strandat 2242.310 kb on + strandat 2242.318 kb on - strandat 2242.694 kb on - strandat 2242.944 kb on - strand, within Shewana3_1893at 2243.022 kb on - strand, within Shewana3_1893

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 450 mM
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2,240,992 + Shewana3_1890 0.66 +1.7
2,241,071 + Shewana3_1890 0.81 +0.7
2,241,481 - Shewana3_1891 0.81 +0.1
2,241,616 + +2.3
2,242,251 + +0.7
2,242,310 + +0.7
2,242,318 - -1.6
2,242,694 - -0.3
2,242,944 - Shewana3_1893 0.15 +1.3
2,243,022 - Shewana3_1893 0.17 +0.7

Or see this region's nucleotide sequence