Experiment: Choline chloride 450 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1737 and Shewana3_1738 are separated by 88 nucleotides Shewana3_1738 and Shewana3_1739 are separated by 138 nucleotides Shewana3_1739 and Shewana3_1740 are separated by 290 nucleotides
Shewana3_1737: Shewana3_1737 - FAD linked oxidase domain-containing protein (RefSeq), at 2,046,778 to 2,049,819
_1737
Shewana3_1738: Shewana3_1738 - hypothetical protein (RefSeq), at 2,049,908 to 2,050,396
_1738
Shewana3_1739: Shewana3_1739 - MarR family transcriptional regulator (RefSeq), at 2,050,535 to 2,050,966
_1739
Shewana3_1740: Shewana3_1740 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 2,051,257 to 2,055,042
_1740
Position (kb)
2049
2050
2051 Strain fitness (log2 ratio)
-1
0
1 at 2048.983 kb on - strand, within Shewana3_1737 at 2048.983 kb on - strand, within Shewana3_1737 at 2049.022 kb on - strand, within Shewana3_1737 at 2049.319 kb on + strand, within Shewana3_1737 at 2049.327 kb on - strand, within Shewana3_1737 at 2050.046 kb on + strand, within Shewana3_1738 at 2050.054 kb on - strand, within Shewana3_1738 at 2050.056 kb on + strand, within Shewana3_1738 at 2050.056 kb on + strand, within Shewana3_1738 at 2050.840 kb on + strand, within Shewana3_1739 at 2051.367 kb on + strand at 2051.367 kb on + strand at 2051.375 kb on - strand at 2051.375 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 450 mM remove 2,048,983 - Shewana3_1737 0.72 +0.8 2,048,983 - Shewana3_1737 0.72 +0.8 2,049,022 - Shewana3_1737 0.74 -0.8 2,049,319 + Shewana3_1737 0.84 -0.2 2,049,327 - Shewana3_1737 0.84 +0.8 2,050,046 + Shewana3_1738 0.28 -1.7 2,050,054 - Shewana3_1738 0.30 +0.8 2,050,056 + Shewana3_1738 0.30 -1.2 2,050,056 + Shewana3_1738 0.30 +0.8 2,050,840 + Shewana3_1739 0.71 +0.2 2,051,367 + +1.5 2,051,367 + +0.8 2,051,375 - -0.8 2,051,375 - -0.8
Or see this region's nucleotide sequence