Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1625

Experiment: Choline chloride 450 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1624 and Shewana3_1625 are separated by 295 nucleotidesShewana3_1625 and Shewana3_1626 are separated by 227 nucleotidesShewana3_1626 and Shewana3_1627 are separated by 18 nucleotides Shewana3_1624: Shewana3_1624 - arginine decarboxylase (RefSeq), at 1,911,885 to 1,913,798 _1624 Shewana3_1625: Shewana3_1625 - S-adenosylmethionine decarboxylase (RefSeq), at 1,914,094 to 1,915,029 _1625 Shewana3_1626: Shewana3_1626 - pyridoxamine 5'-phosphate oxidase (RefSeq), at 1,915,257 to 1,915,895 _1626 Shewana3_1627: Shewana3_1627 - hypothetical protein (RefSeq), at 1,915,914 to 1,916,366 _1627 Position (kb) 1914 1915 1916Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1913.541 kb on + strand, within Shewana3_1624at 1913.894 kb on - strandat 1914.012 kb on + strandat 1914.371 kb on - strand, within Shewana3_1625at 1914.473 kb on - strand, within Shewana3_1625at 1914.884 kb on + strand, within Shewana3_1625at 1914.892 kb on - strand, within Shewana3_1625at 1914.922 kb on - strand, within Shewana3_1625at 1914.939 kb on + strandat 1914.982 kb on - strandat 1914.982 kb on - strandat 1915.904 kb on + strandat 1915.920 kb on - strandat 1915.922 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 450 mM
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1,913,541 + Shewana3_1624 0.87 -3.7
1,913,894 - +1.1
1,914,012 + +1.1
1,914,371 - Shewana3_1625 0.30 -0.2
1,914,473 - Shewana3_1625 0.40 +1.1
1,914,884 + Shewana3_1625 0.84 -2.4
1,914,892 - Shewana3_1625 0.85 +0.8
1,914,922 - Shewana3_1625 0.88 -0.2
1,914,939 + -2.7
1,914,982 - +0.8
1,914,982 - +3.6
1,915,904 + -0.7
1,915,920 - +0.8
1,915,922 + +2.6

Or see this region's nucleotide sequence