Experiment: Choline chloride 450 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0690 and Shewana3_0691 are separated by 402 nucleotides Shewana3_0691 and rplM are separated by 296 nucleotides rplM and rpsI are separated by 14 nucleotides
Shewana3_0690: Shewana3_0690 - peptidase Do (RefSeq), at 805,950 to 807,302
_0690
Shewana3_0691: Shewana3_0691 - AFG1 family ATPase (RefSeq), at 807,705 to 808,871
_0691
Shewana3_0692: rplM - 50S ribosomal protein L13 (RefSeq), at 809,168 to 809,596
rplM
Shewana3_0693: rpsI - 30S ribosomal protein S9 (RefSeq), at 809,611 to 810,003
rpsI
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1
2 at 806.753 kb on + strand, within Shewana3_0690 at 806.999 kb on - strand, within Shewana3_0690 at 807.514 kb on - strand at 807.580 kb on + strand at 807.588 kb on - strand at 807.739 kb on + strand at 807.766 kb on + strand at 807.841 kb on - strand, within Shewana3_0691 at 807.900 kb on + strand, within Shewana3_0691 at 807.976 kb on + strand, within Shewana3_0691 at 808.102 kb on - strand, within Shewana3_0691 at 808.102 kb on - strand, within Shewana3_0691 at 808.334 kb on - strand, within Shewana3_0691 at 808.365 kb on - strand, within Shewana3_0691 at 808.385 kb on + strand, within Shewana3_0691 at 808.446 kb on - strand, within Shewana3_0691 at 808.589 kb on - strand, within Shewana3_0691 at 808.737 kb on - strand, within Shewana3_0691 at 808.737 kb on - strand, within Shewana3_0691 at 808.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 450 mM remove 806,753 + Shewana3_0690 0.59 +1.2 806,999 - Shewana3_0690 0.78 +0.1 807,514 - -0.5 807,580 + -0.3 807,588 - -0.5 807,739 + -0.5 807,766 + +0.4 807,841 - Shewana3_0691 0.12 +0.5 807,900 + Shewana3_0691 0.17 +0.9 807,976 + Shewana3_0691 0.23 +0.4 808,102 - Shewana3_0691 0.34 +0.5 808,102 - Shewana3_0691 0.34 +0.6 808,334 - Shewana3_0691 0.54 +0.3 808,365 - Shewana3_0691 0.57 +0.5 808,385 + Shewana3_0691 0.58 +1.2 808,446 - Shewana3_0691 0.63 -2.0 808,589 - Shewana3_0691 0.76 +1.3 808,737 - Shewana3_0691 0.88 +0.8 808,737 - Shewana3_0691 0.88 +2.5 808,879 - -0.8
Or see this region's nucleotide sequence