Experiment: Choline chloride 450 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0582 and Shewana3_0583 are separated by 144 nucleotides Shewana3_0583 and Shewana3_0584 are separated by 90 nucleotides Shewana3_0584 and Shewana3_0585 are separated by 23 nucleotides
Shewana3_0582: Shewana3_0582 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 681,888 to 683,462
_0582
Shewana3_0583: Shewana3_0583 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 683,607 to 684,539
_0583
Shewana3_0584: Shewana3_0584 - hypothetical protein (RefSeq), at 684,630 to 684,965
_0584
Shewana3_0585: Shewana3_0585 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 684,989 to 685,711
_0585
Position (kb) 683
684
685 Strain fitness (log2 ratio) -1
0
1 at 682.696 kb on + strand, within Shewana3_0582 at 682.797 kb on + strand, within Shewana3_0582 at 682.952 kb on + strand, within Shewana3_0582 at 683.065 kb on + strand, within Shewana3_0582 at 683.229 kb on - strand, within Shewana3_0582 at 683.411 kb on + strand at 683.419 kb on - strand at 683.944 kb on - strand, within Shewana3_0583 at 683.986 kb on - strand, within Shewana3_0583 at 684.083 kb on - strand, within Shewana3_0583 at 684.083 kb on - strand, within Shewana3_0583 at 684.255 kb on + strand, within Shewana3_0583 at 684.263 kb on - strand, within Shewana3_0583 at 684.455 kb on + strand at 684.455 kb on + strand at 684.455 kb on + strand at 684.463 kb on - strand at 684.463 kb on - strand at 684.463 kb on - strand at 684.463 kb on - strand at 684.772 kb on - strand, within Shewana3_0584 at 684.772 kb on - strand, within Shewana3_0584 at 684.789 kb on - strand, within Shewana3_0584 at 684.813 kb on + strand, within Shewana3_0584 at 684.968 kb on - strand at 685.085 kb on - strand, within Shewana3_0585 at 685.087 kb on + strand, within Shewana3_0585 at 685.093 kb on - strand, within Shewana3_0585 at 685.130 kb on - strand, within Shewana3_0585 at 685.143 kb on + strand, within Shewana3_0585 at 685.201 kb on + strand, within Shewana3_0585 at 685.401 kb on - strand, within Shewana3_0585
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 450 mM remove 682,696 + Shewana3_0582 0.51 +0.2 682,797 + Shewana3_0582 0.58 +0.5 682,952 + Shewana3_0582 0.68 -0.4 683,065 + Shewana3_0582 0.75 -0.7 683,229 - Shewana3_0582 0.85 -0.8 683,411 + -0.9 683,419 - +0.3 683,944 - Shewana3_0583 0.36 -0.5 683,986 - Shewana3_0583 0.41 -0.4 684,083 - Shewana3_0583 0.51 -0.4 684,083 - Shewana3_0583 0.51 -0.6 684,255 + Shewana3_0583 0.69 -0.8 684,263 - Shewana3_0583 0.70 -0.8 684,455 + -0.0 684,455 + +1.1 684,455 + +0.3 684,463 - +0.2 684,463 - +0.5 684,463 - -1.1 684,463 - -0.1 684,772 - Shewana3_0584 0.42 +1.1 684,772 - Shewana3_0584 0.42 +1.2 684,789 - Shewana3_0584 0.47 -0.5 684,813 + Shewana3_0584 0.54 +1.0 684,968 - -1.0 685,085 - Shewana3_0585 0.13 -1.6 685,087 + Shewana3_0585 0.14 +0.3 685,093 - Shewana3_0585 0.14 +0.0 685,130 - Shewana3_0585 0.20 -0.6 685,143 + Shewana3_0585 0.21 +0.6 685,201 + Shewana3_0585 0.29 -0.4 685,401 - Shewana3_0585 0.57 -0.8
Or see this region's nucleotide sequence