Experiment: Choline chloride 450 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0499 and Shewana3_0500 are separated by 249 nucleotides Shewana3_0500 and Shewana3_0501 are separated by 41 nucleotides
Shewana3_0499: Shewana3_0499 - transcriptional regulator (RefSeq), at 581,895 to 583,178
_0499
Shewana3_0500: Shewana3_0500 - peptidase M13 (RefSeq), at 583,428 to 585,560
_0500
Shewana3_0501: Shewana3_0501 - fatty acid cistrans isomerase (RefSeq), at 585,602 to 587,995
_0501
Position (kb) 583
584
585
586 Strain fitness (log2 ratio) -2
-1
0
1 at 582.436 kb on + strand, within Shewana3_0499 at 582.452 kb on - strand, within Shewana3_0499 at 582.520 kb on - strand, within Shewana3_0499 at 582.883 kb on + strand, within Shewana3_0499 at 583.142 kb on - strand at 583.193 kb on - strand at 583.222 kb on - strand at 583.265 kb on + strand at 583.265 kb on + strand at 583.460 kb on + strand at 583.622 kb on + strand at 583.629 kb on - strand at 583.751 kb on - strand, within Shewana3_0500 at 583.769 kb on + strand, within Shewana3_0500 at 583.832 kb on + strand, within Shewana3_0500 at 583.840 kb on - strand, within Shewana3_0500 at 583.840 kb on - strand, within Shewana3_0500 at 583.901 kb on - strand, within Shewana3_0500 at 583.936 kb on + strand, within Shewana3_0500 at 583.936 kb on + strand, within Shewana3_0500 at 583.943 kb on + strand, within Shewana3_0500 at 584.045 kb on + strand, within Shewana3_0500 at 584.064 kb on + strand, within Shewana3_0500 at 584.065 kb on + strand, within Shewana3_0500 at 584.065 kb on + strand, within Shewana3_0500 at 584.184 kb on - strand, within Shewana3_0500 at 584.250 kb on - strand, within Shewana3_0500 at 584.270 kb on + strand, within Shewana3_0500 at 584.270 kb on + strand, within Shewana3_0500 at 584.278 kb on - strand, within Shewana3_0500 at 584.280 kb on + strand, within Shewana3_0500 at 584.288 kb on - strand, within Shewana3_0500 at 584.389 kb on + strand, within Shewana3_0500 at 584.419 kb on + strand, within Shewana3_0500 at 584.492 kb on - strand, within Shewana3_0500 at 584.545 kb on + strand, within Shewana3_0500 at 584.545 kb on + strand, within Shewana3_0500 at 584.545 kb on + strand, within Shewana3_0500 at 584.545 kb on + strand, within Shewana3_0500 at 584.553 kb on - strand, within Shewana3_0500 at 584.553 kb on - strand, within Shewana3_0500 at 584.553 kb on - strand, within Shewana3_0500 at 584.607 kb on + strand, within Shewana3_0500 at 584.665 kb on + strand, within Shewana3_0500 at 584.729 kb on + strand, within Shewana3_0500 at 584.737 kb on - strand, within Shewana3_0500 at 584.786 kb on - strand, within Shewana3_0500 at 584.916 kb on + strand, within Shewana3_0500 at 584.924 kb on + strand, within Shewana3_0500 at 585.173 kb on + strand, within Shewana3_0500 at 585.390 kb on + strand at 585.447 kb on + strand at 585.447 kb on + strand at 585.455 kb on - strand at 585.529 kb on - strand at 585.532 kb on - strand at 585.698 kb on - strand at 585.765 kb on + strand at 585.773 kb on - strand at 585.794 kb on + strand at 585.820 kb on - strand at 585.934 kb on - strand, within Shewana3_0501 at 586.017 kb on + strand, within Shewana3_0501 at 586.148 kb on - strand, within Shewana3_0501 at 586.148 kb on - strand, within Shewana3_0501 at 586.163 kb on - strand, within Shewana3_0501 at 586.178 kb on - strand, within Shewana3_0501 at 586.227 kb on - strand, within Shewana3_0501 at 586.366 kb on + strand, within Shewana3_0501 at 586.528 kb on + strand, within Shewana3_0501 at 586.528 kb on + strand, within Shewana3_0501
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 450 mM remove 582,436 + Shewana3_0499 0.42 +1.2 582,452 - Shewana3_0499 0.43 -0.4 582,520 - Shewana3_0499 0.49 -0.7 582,883 + Shewana3_0499 0.77 -0.2 583,142 - +1.3 583,193 - -0.7 583,222 - +0.6 583,265 + -0.4 583,265 + -0.4 583,460 + -0.4 583,622 + -0.4 583,629 - -0.1 583,751 - Shewana3_0500 0.15 +0.9 583,769 + Shewana3_0500 0.16 -0.9 583,832 + Shewana3_0500 0.19 -1.6 583,840 - Shewana3_0500 0.19 -2.1 583,840 - Shewana3_0500 0.19 +0.7 583,901 - Shewana3_0500 0.22 -0.4 583,936 + Shewana3_0500 0.24 -0.2 583,936 + Shewana3_0500 0.24 -1.3 583,943 + Shewana3_0500 0.24 -0.8 584,045 + Shewana3_0500 0.29 -0.6 584,064 + Shewana3_0500 0.30 +1.3 584,065 + Shewana3_0500 0.30 -0.6 584,065 + Shewana3_0500 0.30 +1.1 584,184 - Shewana3_0500 0.35 -0.7 584,250 - Shewana3_0500 0.39 -1.9 584,270 + Shewana3_0500 0.39 -0.0 584,270 + Shewana3_0500 0.39 -1.0 584,278 - Shewana3_0500 0.40 +1.7 584,280 + Shewana3_0500 0.40 -0.6 584,288 - Shewana3_0500 0.40 -0.4 584,389 + Shewana3_0500 0.45 -1.1 584,419 + Shewana3_0500 0.46 -0.5 584,492 - Shewana3_0500 0.50 +0.0 584,545 + Shewana3_0500 0.52 -0.4 584,545 + Shewana3_0500 0.52 -0.6 584,545 + Shewana3_0500 0.52 -0.5 584,545 + Shewana3_0500 0.52 -0.5 584,553 - Shewana3_0500 0.53 -0.6 584,553 - Shewana3_0500 0.53 +0.5 584,553 - Shewana3_0500 0.53 -0.3 584,607 + Shewana3_0500 0.55 -0.7 584,665 + Shewana3_0500 0.58 -0.6 584,729 + Shewana3_0500 0.61 -0.8 584,737 - Shewana3_0500 0.61 -0.2 584,786 - Shewana3_0500 0.64 +1.1 584,916 + Shewana3_0500 0.70 -0.9 584,924 + Shewana3_0500 0.70 +0.7 585,173 + Shewana3_0500 0.82 -0.5 585,390 + -0.8 585,447 + -0.8 585,447 + -0.4 585,455 - +0.9 585,529 - -1.1 585,532 - -0.7 585,698 - -0.5 585,765 + -0.3 585,773 - -0.4 585,794 + +0.4 585,820 - -0.6 585,934 - Shewana3_0501 0.14 -0.6 586,017 + Shewana3_0501 0.17 -0.3 586,148 - Shewana3_0501 0.23 +0.4 586,148 - Shewana3_0501 0.23 -1.8 586,163 - Shewana3_0501 0.23 -0.9 586,178 - Shewana3_0501 0.24 -1.3 586,227 - Shewana3_0501 0.26 -0.6 586,366 + Shewana3_0501 0.32 +0.2 586,528 + Shewana3_0501 0.39 -1.0 586,528 + Shewana3_0501 0.39 -1.5
Or see this region's nucleotide sequence