Experiment: Choline chloride 450 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0259 and Shewana3_0260 are separated by 121 nucleotides Shewana3_0260 and Shewana3_0261 are separated by 274 nucleotides
Shewana3_0259: Shewana3_0259 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 290,484 to 291,530
_0259
Shewana3_0260: Shewana3_0260 - hypothetical protein (RefSeq), at 291,652 to 292,185
_0260
Shewana3_0261: Shewana3_0261 - iron-containing alcohol dehydrogenase (RefSeq), at 292,460 to 293,617
_0261
Position (kb) 291
292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 290.675 kb on - strand, within Shewana3_0259 at 290.694 kb on + strand, within Shewana3_0259 at 290.699 kb on + strand, within Shewana3_0259 at 290.707 kb on - strand, within Shewana3_0259 at 290.707 kb on - strand, within Shewana3_0259 at 290.707 kb on - strand, within Shewana3_0259 at 290.778 kb on + strand, within Shewana3_0259 at 290.785 kb on - strand, within Shewana3_0259 at 290.947 kb on - strand, within Shewana3_0259 at 291.083 kb on + strand, within Shewana3_0259 at 291.091 kb on - strand, within Shewana3_0259 at 291.236 kb on - strand, within Shewana3_0259 at 291.236 kb on - strand, within Shewana3_0259 at 291.324 kb on + strand, within Shewana3_0259 at 291.557 kb on + strand at 291.557 kb on + strand at 291.606 kb on + strand at 291.606 kb on + strand at 291.778 kb on - strand, within Shewana3_0260 at 291.801 kb on + strand, within Shewana3_0260 at 291.822 kb on - strand, within Shewana3_0260 at 291.926 kb on + strand, within Shewana3_0260 at 292.082 kb on - strand, within Shewana3_0260 at 292.173 kb on - strand at 292.178 kb on - strand at 292.281 kb on - strand at 292.381 kb on - strand at 292.414 kb on - strand at 292.540 kb on + strand at 292.570 kb on - strand at 292.687 kb on + strand, within Shewana3_0261 at 292.687 kb on + strand, within Shewana3_0261 at 292.740 kb on - strand, within Shewana3_0261 at 292.766 kb on + strand, within Shewana3_0261 at 292.786 kb on - strand, within Shewana3_0261 at 292.807 kb on + strand, within Shewana3_0261 at 292.808 kb on - strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.843 kb on - strand, within Shewana3_0261 at 292.849 kb on - strand, within Shewana3_0261 at 292.907 kb on + strand, within Shewana3_0261 at 292.922 kb on + strand, within Shewana3_0261 at 292.977 kb on + strand, within Shewana3_0261 at 292.985 kb on - strand, within Shewana3_0261 at 292.990 kb on - strand, within Shewana3_0261 at 292.993 kb on - strand, within Shewana3_0261 at 293.084 kb on + strand, within Shewana3_0261
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 450 mM remove 290,675 - Shewana3_0259 0.18 +1.7 290,694 + Shewana3_0259 0.20 +2.6 290,699 + Shewana3_0259 0.21 +1.6 290,707 - Shewana3_0259 0.21 +1.3 290,707 - Shewana3_0259 0.21 +1.6 290,707 - Shewana3_0259 0.21 +1.2 290,778 + Shewana3_0259 0.28 +3.2 290,785 - Shewana3_0259 0.29 +2.0 290,947 - Shewana3_0259 0.44 +2.6 291,083 + Shewana3_0259 0.57 +2.4 291,091 - Shewana3_0259 0.58 +2.2 291,236 - Shewana3_0259 0.72 +2.4 291,236 - Shewana3_0259 0.72 +2.7 291,324 + Shewana3_0259 0.80 +2.2 291,557 + -0.8 291,557 + -0.7 291,606 + -3.3 291,606 + -0.1 291,778 - Shewana3_0260 0.24 -0.6 291,801 + Shewana3_0260 0.28 -0.8 291,822 - Shewana3_0260 0.32 -1.4 291,926 + Shewana3_0260 0.51 -0.3 292,082 - Shewana3_0260 0.81 -0.9 292,173 - -1.6 292,178 - -1.6 292,281 - -0.3 292,381 - +1.4 292,414 - +1.4 292,540 + -0.7 292,570 - -0.9 292,687 + Shewana3_0261 0.20 +0.1 292,687 + Shewana3_0261 0.20 -0.3 292,740 - Shewana3_0261 0.24 -0.7 292,766 + Shewana3_0261 0.26 -0.2 292,786 - Shewana3_0261 0.28 -0.5 292,807 + Shewana3_0261 0.30 +0.4 292,808 - Shewana3_0261 0.30 -0.6 292,835 + Shewana3_0261 0.32 +0.5 292,835 + Shewana3_0261 0.32 -1.3 292,835 + Shewana3_0261 0.32 -0.5 292,835 + Shewana3_0261 0.32 +0.9 292,843 - Shewana3_0261 0.33 -0.9 292,849 - Shewana3_0261 0.34 -0.5 292,907 + Shewana3_0261 0.39 -0.2 292,922 + Shewana3_0261 0.40 -0.2 292,977 + Shewana3_0261 0.45 -0.2 292,985 - Shewana3_0261 0.45 -0.1 292,990 - Shewana3_0261 0.46 +0.4 292,993 - Shewana3_0261 0.46 -1.3 293,084 + Shewana3_0261 0.54 +1.1
Or see this region's nucleotide sequence