Experiment: Choline chloride 450 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0177 and Shewana3_0178 are separated by 122 nucleotides Shewana3_0178 and Shewana3_0179 are separated by 69 nucleotides
Shewana3_0177: Shewana3_0177 - Delta-9 acyl-phospholipid desaturase (RefSeq), at 210,775 to 211,902
_0177
Shewana3_0178: Shewana3_0178 - DNA-binding transcriptional repressor FabR (RefSeq), at 212,025 to 212,639
_0178
Shewana3_0179: Shewana3_0179 - tRNA (uracil-5-)-methyltransferase (RefSeq), at 212,709 to 213,806
_0179
Position (kb) 212
213 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 211.072 kb on - strand, within Shewana3_0177 at 211.102 kb on - strand, within Shewana3_0177 at 211.108 kb on - strand, within Shewana3_0177 at 211.147 kb on - strand, within Shewana3_0177 at 211.196 kb on + strand, within Shewana3_0177 at 211.247 kb on + strand, within Shewana3_0177 at 211.247 kb on + strand, within Shewana3_0177 at 211.255 kb on - strand, within Shewana3_0177 at 211.270 kb on - strand, within Shewana3_0177 at 211.270 kb on - strand, within Shewana3_0177 at 211.386 kb on + strand, within Shewana3_0177 at 211.429 kb on - strand, within Shewana3_0177 at 211.467 kb on + strand, within Shewana3_0177 at 211.518 kb on + strand, within Shewana3_0177 at 211.679 kb on + strand, within Shewana3_0177 at 211.712 kb on - strand, within Shewana3_0177 at 211.752 kb on + strand, within Shewana3_0177 at 211.815 kb on + strand at 211.820 kb on + strand at 211.851 kb on + strand at 211.859 kb on - strand at 212.040 kb on - strand at 212.090 kb on + strand, within Shewana3_0178 at 212.090 kb on + strand, within Shewana3_0178 at 212.090 kb on + strand, within Shewana3_0178 at 212.090 kb on + strand, within Shewana3_0178 at 212.123 kb on - strand, within Shewana3_0178 at 212.195 kb on + strand, within Shewana3_0178 at 212.230 kb on + strand, within Shewana3_0178 at 212.230 kb on + strand, within Shewana3_0178 at 212.230 kb on + strand, within Shewana3_0178 at 212.230 kb on + strand, within Shewana3_0178 at 212.238 kb on - strand, within Shewana3_0178 at 212.238 kb on - strand, within Shewana3_0178 at 212.238 kb on - strand, within Shewana3_0178 at 212.238 kb on - strand, within Shewana3_0178 at 212.238 kb on - strand, within Shewana3_0178 at 212.271 kb on + strand, within Shewana3_0178 at 212.391 kb on + strand, within Shewana3_0178 at 212.461 kb on + strand, within Shewana3_0178 at 212.461 kb on + strand, within Shewana3_0178 at 212.461 kb on + strand, within Shewana3_0178 at 212.469 kb on - strand, within Shewana3_0178 at 212.471 kb on + strand, within Shewana3_0178 at 212.491 kb on - strand, within Shewana3_0178 at 212.499 kb on + strand, within Shewana3_0178 at 212.600 kb on - strand at 212.618 kb on + strand at 212.734 kb on - strand at 212.757 kb on - strand at 212.757 kb on - strand at 212.806 kb on - strand at 212.875 kb on + strand, within Shewana3_0179 at 212.892 kb on + strand, within Shewana3_0179 at 212.943 kb on + strand, within Shewana3_0179 at 212.966 kb on + strand, within Shewana3_0179 at 213.100 kb on - strand, within Shewana3_0179 at 213.436 kb on - strand, within Shewana3_0179 at 213.563 kb on - strand, within Shewana3_0179
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 450 mM remove 211,072 - Shewana3_0177 0.26 -2.5 211,102 - Shewana3_0177 0.29 +0.5 211,108 - Shewana3_0177 0.30 +0.6 211,147 - Shewana3_0177 0.33 -0.8 211,196 + Shewana3_0177 0.37 -1.2 211,247 + Shewana3_0177 0.42 +0.8 211,247 + Shewana3_0177 0.42 -0.1 211,255 - Shewana3_0177 0.43 -1.2 211,270 - Shewana3_0177 0.44 -0.6 211,270 - Shewana3_0177 0.44 -0.5 211,386 + Shewana3_0177 0.54 -0.1 211,429 - Shewana3_0177 0.58 -0.4 211,467 + Shewana3_0177 0.61 +0.9 211,518 + Shewana3_0177 0.66 -0.4 211,679 + Shewana3_0177 0.80 -1.1 211,712 - Shewana3_0177 0.83 +1.1 211,752 + Shewana3_0177 0.87 -1.4 211,815 + +0.1 211,820 + -0.7 211,851 + -2.3 211,859 - -1.8 212,040 - -1.1 212,090 + Shewana3_0178 0.11 -4.2 212,090 + Shewana3_0178 0.11 -1.7 212,090 + Shewana3_0178 0.11 -3.7 212,090 + Shewana3_0178 0.11 -3.5 212,123 - Shewana3_0178 0.16 -2.9 212,195 + Shewana3_0178 0.28 -3.6 212,230 + Shewana3_0178 0.33 -2.8 212,230 + Shewana3_0178 0.33 -3.6 212,230 + Shewana3_0178 0.33 -3.6 212,230 + Shewana3_0178 0.33 -4.5 212,238 - Shewana3_0178 0.35 +1.5 212,238 - Shewana3_0178 0.35 -3.2 212,238 - Shewana3_0178 0.35 +1.5 212,238 - Shewana3_0178 0.35 +1.5 212,238 - Shewana3_0178 0.35 -1.1 212,271 + Shewana3_0178 0.40 -3.7 212,391 + Shewana3_0178 0.60 -4.8 212,461 + Shewana3_0178 0.71 -4.6 212,461 + Shewana3_0178 0.71 -3.9 212,461 + Shewana3_0178 0.71 -0.9 212,469 - Shewana3_0178 0.72 -2.5 212,471 + Shewana3_0178 0.73 -1.2 212,491 - Shewana3_0178 0.76 -0.9 212,499 + Shewana3_0178 0.77 -1.8 212,600 - -0.9 212,618 + -0.2 212,734 - -1.9 212,757 - +0.4 212,757 - -0.5 212,806 - -1.1 212,875 + Shewana3_0179 0.15 +0.5 212,892 + Shewana3_0179 0.17 +1.5 212,943 + Shewana3_0179 0.21 +2.0 212,966 + Shewana3_0179 0.23 -1.3 213,100 - Shewana3_0179 0.36 -0.1 213,436 - Shewana3_0179 0.66 -0.5 213,563 - Shewana3_0179 0.78 -0.7
Or see this region's nucleotide sequence