Experiment: Choline chloride 450 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4361 and Shewana3_4362 are separated by 163 nucleotides Shewana3_4362 and Shewana3_4363 are separated by 49 nucleotides
Shewana3_4361: Shewana3_4361 - hypothetical protein (RefSeq), at 246,302 to 247,450
_4361
Shewana3_4362: Shewana3_4362 - phosphoadenosine phosphosulfate reductase (RefSeq), at 247,614 to 249,209
_4362
Shewana3_4363: Shewana3_4363 - transposase Tn3 family protein (RefSeq), at 249,259 to 252,246
_4363
Position (kb) 247
248
249
250 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 246.726 kb on + strand, within Shewana3_4361 at 246.770 kb on - strand, within Shewana3_4361 at 246.865 kb on - strand, within Shewana3_4361 at 246.865 kb on - strand, within Shewana3_4361 at 247.120 kb on + strand, within Shewana3_4361 at 247.368 kb on + strand at 247.624 kb on - strand at 247.727 kb on + strand at 247.775 kb on + strand, within Shewana3_4362 at 247.998 kb on - strand, within Shewana3_4362 at 248.241 kb on - strand, within Shewana3_4362 at 248.258 kb on + strand, within Shewana3_4362 at 248.585 kb on - strand, within Shewana3_4362 at 248.617 kb on - strand, within Shewana3_4362 at 248.665 kb on - strand, within Shewana3_4362 at 248.702 kb on + strand, within Shewana3_4362 at 248.741 kb on + strand, within Shewana3_4362 at 248.924 kb on - strand, within Shewana3_4362 at 249.008 kb on - strand, within Shewana3_4362 at 249.057 kb on + strand at 249.178 kb on + strand at 249.310 kb on - strand at 249.409 kb on + strand at 249.439 kb on + strand at 249.577 kb on - strand, within Shewana3_4363 at 249.577 kb on - strand, within Shewana3_4363 at 249.676 kb on - strand, within Shewana3_4363 at 249.756 kb on - strand, within Shewana3_4363 at 249.862 kb on - strand, within Shewana3_4363 at 249.862 kb on - strand, within Shewana3_4363 at 249.900 kb on + strand, within Shewana3_4363 at 250.000 kb on - strand, within Shewana3_4363 at 250.062 kb on - strand, within Shewana3_4363 at 250.084 kb on + strand, within Shewana3_4363 at 250.181 kb on + strand, within Shewana3_4363 at 250.201 kb on - strand, within Shewana3_4363
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 450 mM remove 246,726 + Shewana3_4361 0.37 -0.5 246,770 - Shewana3_4361 0.41 +0.0 246,865 - Shewana3_4361 0.49 -2.5 246,865 - Shewana3_4361 0.49 -0.2 247,120 + Shewana3_4361 0.71 +1.5 247,368 + -0.6 247,624 - +1.6 247,727 + +0.5 247,775 + Shewana3_4362 0.10 -0.1 247,998 - Shewana3_4362 0.24 +0.3 248,241 - Shewana3_4362 0.39 -1.1 248,258 + Shewana3_4362 0.40 -0.5 248,585 - Shewana3_4362 0.61 +0.3 248,617 - Shewana3_4362 0.63 -1.5 248,665 - Shewana3_4362 0.66 -0.2 248,702 + Shewana3_4362 0.68 -0.5 248,741 + Shewana3_4362 0.71 -1.7 248,924 - Shewana3_4362 0.82 +0.4 249,008 - Shewana3_4362 0.87 +3.3 249,057 + +0.5 249,178 + +1.5 249,310 - +0.3 249,409 + +0.5 249,439 + -1.1 249,577 - Shewana3_4363 0.11 +0.0 249,577 - Shewana3_4363 0.11 -1.8 249,676 - Shewana3_4363 0.14 +0.0 249,756 - Shewana3_4363 0.17 +0.2 249,862 - Shewana3_4363 0.20 +0.3 249,862 - Shewana3_4363 0.20 +2.3 249,900 + Shewana3_4363 0.21 -1.3 250,000 - Shewana3_4363 0.25 -0.8 250,062 - Shewana3_4363 0.27 +0.2 250,084 + Shewana3_4363 0.28 +1.1 250,181 + Shewana3_4363 0.31 -2.3 250,201 - Shewana3_4363 0.32 +0.5
Or see this region's nucleotide sequence