Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5647 and Pf1N1B4_5648 are separated by 133 nucleotides Pf1N1B4_5648 and Pf1N1B4_5649 are separated by 77 nucleotides Pf1N1B4_5649 and Pf1N1B4_5650 are separated by 175 nucleotides
Pf1N1B4_5647 - hypothetical protein, at 75,478 to 75,927
_5647
Pf1N1B4_5648 - transcriptional regulator, MerR family, at 76,061 to 76,465
_5648
Pf1N1B4_5649 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 76,543 to 77,766
_5649
Pf1N1B4_5650 - Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes, at 77,942 to 79,588
_5650
Position (kb) 76
77
78 Strain fitness (log2 ratio) -2
-1
0
1
2 at 75.577 kb on + strand, within Pf1N1B4_5647 at 75.625 kb on + strand, within Pf1N1B4_5647 at 75.625 kb on + strand, within Pf1N1B4_5647 at 75.625 kb on + strand, within Pf1N1B4_5647 at 75.626 kb on - strand, within Pf1N1B4_5647 at 75.627 kb on + strand, within Pf1N1B4_5647 at 75.627 kb on + strand, within Pf1N1B4_5647 at 75.627 kb on + strand, within Pf1N1B4_5647 at 75.627 kb on + strand, within Pf1N1B4_5647 at 75.627 kb on + strand, within Pf1N1B4_5647 at 75.647 kb on - strand, within Pf1N1B4_5647 at 75.712 kb on + strand, within Pf1N1B4_5647 at 75.869 kb on + strand, within Pf1N1B4_5647 at 75.869 kb on + strand, within Pf1N1B4_5647 at 76.062 kb on + strand at 76.062 kb on + strand at 76.505 kb on - strand at 76.669 kb on + strand, within Pf1N1B4_5649 at 77.320 kb on + strand at 77.320 kb on + strand, within Pf1N1B4_5649 at 77.380 kb on + strand at 77.381 kb on - strand, within Pf1N1B4_5649 at 77.381 kb on - strand, within Pf1N1B4_5649 at 77.622 kb on + strand, within Pf1N1B4_5649 at 77.674 kb on - strand at 77.719 kb on + strand at 77.719 kb on + strand at 77.719 kb on + strand at 77.719 kb on + strand at 77.743 kb on + strand at 77.760 kb on + strand at 77.761 kb on - strand at 77.761 kb on - strand at 77.765 kb on - strand at 77.765 kb on - strand at 77.919 kb on - strand at 78.050 kb on + strand at 78.079 kb on - strand at 78.087 kb on + strand at 78.088 kb on - strand at 78.150 kb on + strand, within Pf1N1B4_5650 at 78.150 kb on + strand, within Pf1N1B4_5650 at 78.657 kb on + strand, within Pf1N1B4_5650
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 75,577 + Pf1N1B4_5647 0.22 +0.3 75,625 + Pf1N1B4_5647 0.33 +1.3 75,625 + Pf1N1B4_5647 0.33 -0.3 75,625 + Pf1N1B4_5647 0.33 +0.7 75,626 - Pf1N1B4_5647 0.33 -1.4 75,627 + Pf1N1B4_5647 0.33 +1.0 75,627 + Pf1N1B4_5647 0.33 -0.3 75,627 + Pf1N1B4_5647 0.33 -0.5 75,627 + Pf1N1B4_5647 0.33 +0.1 75,627 + Pf1N1B4_5647 0.33 -1.6 75,647 - Pf1N1B4_5647 0.38 +0.3 75,712 + Pf1N1B4_5647 0.52 -1.1 75,869 + Pf1N1B4_5647 0.87 +0.5 75,869 + Pf1N1B4_5647 0.87 +1.7 76,062 + +0.1 76,062 + +2.0 76,505 - -1.0 76,669 + Pf1N1B4_5649 0.10 -1.9 77,320 + -1.3 77,320 + Pf1N1B4_5649 0.63 -2.1 77,380 + +1.3 77,381 - Pf1N1B4_5649 0.68 -1.9 77,381 - Pf1N1B4_5649 0.68 -1.9 77,622 + Pf1N1B4_5649 0.88 -0.3 77,674 - +1.0 77,719 + +0.5 77,719 + -1.3 77,719 + -0.3 77,719 + +0.2 77,743 + -0.9 77,760 + -0.3 77,761 - -1.0 77,761 - -0.9 77,765 - -0.3 77,765 - -2.6 77,919 - -0.3 78,050 + -1.9 78,079 - -1.5 78,087 + -0.1 78,088 - +1.0 78,150 + Pf1N1B4_5650 0.13 +0.9 78,150 + Pf1N1B4_5650 0.13 +0.9 78,657 + Pf1N1B4_5650 0.43 -0.3
Or see this region's nucleotide sequence