Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06566

Experiment: 2'-Deoxyinosine 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06565 and H281DRAFT_06566 are separated by 259 nucleotidesH281DRAFT_06566 and H281DRAFT_06567 are separated by 515 nucleotidesH281DRAFT_06567 and H281DRAFT_06568 are separated by 177 nucleotides H281DRAFT_06565: H281DRAFT_06565 - filamentous hemagglutinin family N-terminal domain-containing protein, at 4,808 to 7,060 _06565 H281DRAFT_06566: H281DRAFT_06566 - hypothetical protein, at 7,320 to 7,823 _06566 H281DRAFT_06567: H281DRAFT_06567 - hypothetical protein, at 8,339 to 8,518 _06567 H281DRAFT_06568: H281DRAFT_06568 - DNA-binding protein H-NS, at 8,696 to 8,980 _06568 Position (kb) 7 8Strain fitness (log2 ratio) -1 0 1 2at 6.686 kb on + strand, within H281DRAFT_06565at 6.709 kb on - strand, within H281DRAFT_06565at 6.921 kb on + strandat 6.921 kb on + strandat 7.006 kb on + strandat 7.006 kb on + strandat 7.006 kb on + strandat 7.006 kb on + strandat 7.006 kb on + strandat 7.006 kb on + strandat 7.007 kb on - strandat 7.007 kb on - strandat 7.007 kb on - strandat 7.007 kb on - strandat 7.010 kb on + strandat 7.049 kb on - strandat 7.140 kb on + strandat 7.153 kb on + strandat 7.157 kb on + strandat 7.157 kb on + strandat 7.261 kb on + strandat 7.307 kb on + strandat 7.307 kb on + strandat 7.331 kb on - strandat 7.473 kb on + strand, within H281DRAFT_06566at 7.531 kb on + strand, within H281DRAFT_06566at 7.531 kb on + strand, within H281DRAFT_06566at 7.531 kb on + strand, within H281DRAFT_06566at 7.532 kb on - strand, within H281DRAFT_06566at 7.532 kb on - strand, within H281DRAFT_06566at 7.575 kb on - strand, within H281DRAFT_06566at 7.575 kb on - strand, within H281DRAFT_06566at 7.579 kb on + strand, within H281DRAFT_06566at 7.647 kb on + strand, within H281DRAFT_06566at 7.706 kb on + strand, within H281DRAFT_06566at 7.706 kb on + strand, within H281DRAFT_06566at 7.706 kb on + strand, within H281DRAFT_06566at 7.706 kb on + strand, within H281DRAFT_06566at 7.706 kb on + strand, within H281DRAFT_06566at 7.707 kb on - strand, within H281DRAFT_06566at 7.710 kb on + strand, within H281DRAFT_06566at 7.710 kb on + strand, within H281DRAFT_06566at 7.729 kb on + strand, within H281DRAFT_06566at 7.729 kb on + strand, within H281DRAFT_06566at 7.730 kb on - strand, within H281DRAFT_06566at 7.730 kb on - strand, within H281DRAFT_06566at 7.767 kb on - strand, within H281DRAFT_06566at 7.864 kb on + strandat 7.865 kb on - strandat 7.873 kb on - strandat 8.031 kb on + strandat 8.031 kb on + strandat 8.032 kb on - strandat 8.032 kb on - strandat 8.032 kb on - strandat 8.045 kb on + strandat 8.073 kb on + strandat 8.135 kb on - strandat 8.135 kb on - strandat 8.136 kb on + strandat 8.170 kb on + strandat 8.240 kb on + strandat 8.240 kb on + strandat 8.241 kb on - strandat 8.363 kb on + strand, within H281DRAFT_06567at 8.363 kb on + strand, within H281DRAFT_06567at 8.511 kb on + strandat 8.511 kb on + strandat 8.531 kb on + strandat 8.531 kb on + strandat 8.535 kb on + strandat 8.535 kb on + strandat 8.535 kb on + strandat 8.535 kb on + strandat 8.536 kb on - strandat 8.536 kb on - strandat 8.536 kb on - strandat 8.536 kb on - strandat 8.536 kb on - strandat 8.536 kb on - strandat 8.544 kb on - strandat 8.562 kb on + strandat 8.562 kb on + strandat 8.563 kb on - strandat 8.563 kb on - strandat 8.617 kb on + strandat 8.617 kb on + strandat 8.617 kb on + strandat 8.618 kb on - strandat 8.618 kb on - strandat 8.689 kb on - strandat 8.788 kb on + strand, within H281DRAFT_06568at 8.788 kb on + strand, within H281DRAFT_06568at 8.793 kb on + strand, within H281DRAFT_06568

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
remove
6,686 + H281DRAFT_06565 0.83 +0.0
6,709 - H281DRAFT_06565 0.84 +0.9
6,921 + -0.0
6,921 + +0.0
7,006 + -1.5
7,006 + +0.1
7,006 + +0.3
7,006 + +0.5
7,006 + -0.6
7,006 + +0.5
7,007 - -1.0
7,007 - +0.3
7,007 - +0.6
7,007 - +1.2
7,010 + +1.2
7,049 - +0.6
7,140 + -1.3
7,153 + -0.4
7,157 + -0.5
7,157 + -0.2
7,261 + -0.4
7,307 + -0.2
7,307 + -0.0
7,331 - +0.8
7,473 + H281DRAFT_06566 0.30 -0.1
7,531 + H281DRAFT_06566 0.42 -0.0
7,531 + H281DRAFT_06566 0.42 -1.5
7,531 + H281DRAFT_06566 0.42 +0.0
7,532 - H281DRAFT_06566 0.42 +0.6
7,532 - H281DRAFT_06566 0.42 +0.7
7,575 - H281DRAFT_06566 0.51 -0.7
7,575 - H281DRAFT_06566 0.51 -1.5
7,579 + H281DRAFT_06566 0.51 +0.0
7,647 + H281DRAFT_06566 0.65 +0.2
7,706 + H281DRAFT_06566 0.77 +0.5
7,706 + H281DRAFT_06566 0.77 +1.2
7,706 + H281DRAFT_06566 0.77 +1.1
7,706 + H281DRAFT_06566 0.77 +0.4
7,706 + H281DRAFT_06566 0.77 +1.3
7,707 - H281DRAFT_06566 0.77 +0.6
7,710 + H281DRAFT_06566 0.77 +0.3
7,710 + H281DRAFT_06566 0.77 -0.5
7,729 + H281DRAFT_06566 0.81 -1.5
7,729 + H281DRAFT_06566 0.81 +0.3
7,730 - H281DRAFT_06566 0.81 -1.1
7,730 - H281DRAFT_06566 0.81 -0.8
7,767 - H281DRAFT_06566 0.89 -0.5
7,864 + +0.0
7,865 - +0.1
7,873 - +1.5
8,031 + +0.1
8,031 + -0.3
8,032 - -1.7
8,032 - -0.8
8,032 - -0.2
8,045 + +0.9
8,073 + +0.8
8,135 - -0.4
8,135 - -0.4
8,136 + -1.5
8,170 + +1.2
8,240 + -0.3
8,240 + -0.0
8,241 - -1.1
8,363 + H281DRAFT_06567 0.13 +0.9
8,363 + H281DRAFT_06567 0.13 +1.1
8,511 + +1.5
8,511 + -1.3
8,531 + -0.2
8,531 + -0.8
8,535 + +1.9
8,535 + -1.1
8,535 + +0.4
8,535 + -0.6
8,536 - +0.2
8,536 - +0.5
8,536 - -0.0
8,536 - -0.6
8,536 - -0.9
8,536 - +1.5
8,544 - -0.4
8,562 + -0.4
8,562 + +0.7
8,563 - -0.1
8,563 - +2.2
8,617 + +0.2
8,617 + +0.4
8,617 + -0.1
8,618 - +0.2
8,618 - -1.0
8,689 - -1.2
8,788 + H281DRAFT_06568 0.32 -0.5
8,788 + H281DRAFT_06568 0.32 -0.9
8,793 + H281DRAFT_06568 0.34 -0.1

Or see this region's nucleotide sequence