Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05949

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05948 and H281DRAFT_05949 are separated by 29 nucleotidesH281DRAFT_05949 and H281DRAFT_05950 are separated by 22 nucleotides H281DRAFT_05947: H281DRAFT_05947 - monosaccharide ABC transporter membrane protein, CUT2 family, at 87,327 to 88,262 _05947 H281DRAFT_05948: H281DRAFT_05948 - monosaccharide ABC transporter membrane protein, CUT2 family, at 88,259 to 89,230 _05948 H281DRAFT_05949: H281DRAFT_05949 - gluconolactonase, at 89,260 to 90,168 _05949 H281DRAFT_05950: H281DRAFT_05950 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 90,191 to 91,213 _05950 Position (kb) 89 90 91Strain fitness (log2 ratio) -1 0 1 2at 88.779 kb on - strand, within H281DRAFT_05948at 89.172 kb on + strandat 89.173 kb on - strandat 89.175 kb on - strandat 89.876 kb on + strand, within H281DRAFT_05949at 89.985 kb on - strand, within H281DRAFT_05949at 90.017 kb on - strand, within H281DRAFT_05949at 90.129 kb on - strandat 90.308 kb on + strand, within H281DRAFT_05950at 90.319 kb on + strand, within H281DRAFT_05950at 90.954 kb on + strand, within H281DRAFT_05950at 90.954 kb on + strand, within H281DRAFT_05950at 90.955 kb on - strand, within H281DRAFT_05950

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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88,779 - H281DRAFT_05948 0.53 -0.1
89,172 + +0.3
89,173 - -0.0
89,175 - +0.5
89,876 + H281DRAFT_05949 0.68 +1.8
89,985 - H281DRAFT_05949 0.80 +0.6
90,017 - H281DRAFT_05949 0.83 -0.3
90,129 - +0.6
90,308 + H281DRAFT_05950 0.11 +0.8
90,319 + H281DRAFT_05950 0.13 -0.8
90,954 + H281DRAFT_05950 0.75 +0.1
90,954 + H281DRAFT_05950 0.75 +0.5
90,955 - H281DRAFT_05950 0.75 +0.3

Or see this region's nucleotide sequence