Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05187

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05185 and H281DRAFT_05186 are separated by 13 nucleotidesH281DRAFT_05186 and H281DRAFT_05187 are separated by 141 nucleotidesH281DRAFT_05187 and H281DRAFT_05188 are separated by 286 nucleotides H281DRAFT_05185: H281DRAFT_05185 - hypothetical protein, at 142,460 to 142,759 _05185 H281DRAFT_05186: H281DRAFT_05186 - hypothetical protein, at 142,773 to 143,252 _05186 H281DRAFT_05187: H281DRAFT_05187 - hypothetical protein, at 143,394 to 143,669 _05187 H281DRAFT_05188: H281DRAFT_05188 - Pimeloyl-ACP methyl ester carboxylesterase, at 143,956 to 144,978 _05188 Position (kb) 143 144Strain fitness (log2 ratio) -3 -2 -1 0 1at 142.476 kb on - strandat 142.579 kb on + strand, within H281DRAFT_05185at 142.581 kb on + strand, within H281DRAFT_05185at 142.581 kb on + strand, within H281DRAFT_05185at 142.582 kb on - strand, within H281DRAFT_05185at 142.748 kb on - strandat 142.835 kb on - strand, within H281DRAFT_05186at 142.995 kb on - strand, within H281DRAFT_05186at 142.995 kb on - strand, within H281DRAFT_05186at 142.996 kb on + strand, within H281DRAFT_05186at 142.996 kb on + strand, within H281DRAFT_05186at 142.996 kb on + strand, within H281DRAFT_05186at 142.996 kb on + strand, within H281DRAFT_05186at 142.996 kb on + strand, within H281DRAFT_05186at 142.997 kb on - strand, within H281DRAFT_05186at 142.997 kb on - strand, within H281DRAFT_05186at 143.099 kb on + strand, within H281DRAFT_05186at 143.202 kb on + strand, within H281DRAFT_05186at 143.202 kb on + strand, within H281DRAFT_05186at 143.203 kb on - strand, within H281DRAFT_05186at 143.203 kb on - strand, within H281DRAFT_05186at 143.261 kb on - strandat 143.261 kb on - strandat 143.324 kb on + strandat 143.388 kb on + strandat 143.433 kb on + strand, within H281DRAFT_05187at 143.433 kb on + strand, within H281DRAFT_05187at 143.433 kb on + strand, within H281DRAFT_05187at 143.433 kb on + strand, within H281DRAFT_05187at 143.433 kb on + strand, within H281DRAFT_05187at 143.433 kb on + strand, within H281DRAFT_05187at 143.434 kb on - strand, within H281DRAFT_05187at 143.434 kb on - strand, within H281DRAFT_05187at 143.434 kb on - strand, within H281DRAFT_05187at 143.434 kb on - strand, within H281DRAFT_05187at 143.434 kb on - strand, within H281DRAFT_05187at 143.434 kb on - strand, within H281DRAFT_05187at 143.434 kb on - strand, within H281DRAFT_05187at 143.434 kb on - strand, within H281DRAFT_05187at 143.434 kb on - strand, within H281DRAFT_05187at 143.435 kb on + strand, within H281DRAFT_05187at 143.435 kb on + strand, within H281DRAFT_05187at 143.436 kb on - strand, within H281DRAFT_05187at 143.437 kb on + strand, within H281DRAFT_05187at 143.437 kb on + strand, within H281DRAFT_05187at 143.437 kb on + strand, within H281DRAFT_05187at 143.437 kb on + strand, within H281DRAFT_05187at 143.438 kb on - strand, within H281DRAFT_05187at 143.470 kb on + strand, within H281DRAFT_05187at 143.504 kb on - strand, within H281DRAFT_05187at 143.527 kb on - strand, within H281DRAFT_05187at 143.532 kb on + strand, within H281DRAFT_05187at 143.533 kb on - strand, within H281DRAFT_05187at 143.533 kb on - strand, within H281DRAFT_05187at 143.607 kb on + strand, within H281DRAFT_05187at 143.608 kb on - strand, within H281DRAFT_05187at 143.656 kb on + strandat 143.656 kb on + strandat 143.718 kb on + strandat 143.718 kb on + strandat 144.341 kb on + strand, within H281DRAFT_05188at 144.431 kb on + strand, within H281DRAFT_05188at 144.432 kb on - strand, within H281DRAFT_05188at 144.432 kb on - strand, within H281DRAFT_05188at 144.551 kb on - strand, within H281DRAFT_05188

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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142,476 - +1.2
142,579 + H281DRAFT_05185 0.40 +0.3
142,581 + H281DRAFT_05185 0.40 +0.1
142,581 + H281DRAFT_05185 0.40 -1.0
142,582 - H281DRAFT_05185 0.41 -0.0
142,748 - -2.7
142,835 - H281DRAFT_05186 0.13 -0.4
142,995 - H281DRAFT_05186 0.46 -0.0
142,995 - H281DRAFT_05186 0.46 -1.1
142,996 + H281DRAFT_05186 0.46 -1.3
142,996 + H281DRAFT_05186 0.46 -0.1
142,996 + H281DRAFT_05186 0.46 +1.4
142,996 + H281DRAFT_05186 0.46 -0.7
142,996 + H281DRAFT_05186 0.46 +0.3
142,997 - H281DRAFT_05186 0.47 -0.3
142,997 - H281DRAFT_05186 0.47 -0.4
143,099 + H281DRAFT_05186 0.68 -0.1
143,202 + H281DRAFT_05186 0.89 +0.1
143,202 + H281DRAFT_05186 0.89 +0.2
143,203 - H281DRAFT_05186 0.90 +1.1
143,203 - H281DRAFT_05186 0.90 +0.2
143,261 - +1.1
143,261 - -0.6
143,324 + +1.1
143,388 + +0.4
143,433 + H281DRAFT_05187 0.14 +0.6
143,433 + H281DRAFT_05187 0.14 +0.0
143,433 + H281DRAFT_05187 0.14 +0.1
143,433 + H281DRAFT_05187 0.14 +0.4
143,433 + H281DRAFT_05187 0.14 +0.1
143,433 + H281DRAFT_05187 0.14 +0.7
143,434 - H281DRAFT_05187 0.14 -0.3
143,434 - H281DRAFT_05187 0.14 +0.1
143,434 - H281DRAFT_05187 0.14 +0.1
143,434 - H281DRAFT_05187 0.14 -0.3
143,434 - H281DRAFT_05187 0.14 +0.0
143,434 - H281DRAFT_05187 0.14 +0.0
143,434 - H281DRAFT_05187 0.14 -0.7
143,434 - H281DRAFT_05187 0.14 +0.3
143,434 - H281DRAFT_05187 0.14 -0.2
143,435 + H281DRAFT_05187 0.15 -0.6
143,435 + H281DRAFT_05187 0.15 +0.8
143,436 - H281DRAFT_05187 0.15 -1.1
143,437 + H281DRAFT_05187 0.16 +0.2
143,437 + H281DRAFT_05187 0.16 +0.2
143,437 + H281DRAFT_05187 0.16 -2.2
143,437 + H281DRAFT_05187 0.16 +1.7
143,438 - H281DRAFT_05187 0.16 +0.2
143,470 + H281DRAFT_05187 0.28 +0.6
143,504 - H281DRAFT_05187 0.40 -3.3
143,527 - H281DRAFT_05187 0.48 +1.0
143,532 + H281DRAFT_05187 0.50 -0.2
143,533 - H281DRAFT_05187 0.50 -0.1
143,533 - H281DRAFT_05187 0.50 -1.3
143,607 + H281DRAFT_05187 0.77 +0.4
143,608 - H281DRAFT_05187 0.78 -0.4
143,656 + +0.2
143,656 + -1.4
143,718 + +0.6
143,718 + -1.2
144,341 + H281DRAFT_05188 0.38 +0.8
144,431 + H281DRAFT_05188 0.46 +0.4
144,432 - H281DRAFT_05188 0.47 -1.1
144,432 - H281DRAFT_05188 0.47 -0.7
144,551 - H281DRAFT_05188 0.58 +0.2

Or see this region's nucleotide sequence