Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04820

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04818 and H281DRAFT_04819 are separated by 69 nucleotidesH281DRAFT_04819 and H281DRAFT_04820 are separated by 12 nucleotidesH281DRAFT_04820 and H281DRAFT_04821 are separated by 203 nucleotides H281DRAFT_04818: H281DRAFT_04818 - dihydroorotase, at 252,617 to 253,897 _04818 H281DRAFT_04819: H281DRAFT_04819 - lyso-ornithine lipid acyltransferase, at 253,967 to 254,806 _04819 H281DRAFT_04820: H281DRAFT_04820 - Bis(5'nucleosyl)-tetraphosphatase, ApaH, at 254,819 to 255,703 _04820 H281DRAFT_04821: H281DRAFT_04821 - Nucleoside-diphosphate-sugar epimerase, at 255,907 to 256,818 _04821 Position (kb) 254 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 254.131 kb on + strandat 254.132 kb on - strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.198 kb on + strand, within H281DRAFT_04819at 254.199 kb on - strand, within H281DRAFT_04819at 254.199 kb on - strand, within H281DRAFT_04819at 254.199 kb on - strand, within H281DRAFT_04819at 254.199 kb on - strand, within H281DRAFT_04819at 254.199 kb on - strand, within H281DRAFT_04819at 254.199 kb on - strand, within H281DRAFT_04819at 254.199 kb on - strand, within H281DRAFT_04819at 254.290 kb on + strand, within H281DRAFT_04819at 254.437 kb on + strand, within H281DRAFT_04819at 254.438 kb on - strand, within H281DRAFT_04819at 254.438 kb on - strand, within H281DRAFT_04819at 254.438 kb on - strand, within H281DRAFT_04819at 254.481 kb on + strand, within H281DRAFT_04819at 254.492 kb on + strand, within H281DRAFT_04819at 254.492 kb on + strand, within H281DRAFT_04819at 254.492 kb on + strand, within H281DRAFT_04819at 254.492 kb on + strand, within H281DRAFT_04819at 254.531 kb on + strand, within H281DRAFT_04819at 254.531 kb on + strand, within H281DRAFT_04819at 254.531 kb on + strand, within H281DRAFT_04819at 254.531 kb on + strand, within H281DRAFT_04819at 254.531 kb on + strand, within H281DRAFT_04819at 254.531 kb on + strand, within H281DRAFT_04819at 254.531 kb on + strand, within H281DRAFT_04819at 254.532 kb on - strand, within H281DRAFT_04819at 254.532 kb on - strand, within H281DRAFT_04819at 254.532 kb on - strand, within H281DRAFT_04819at 254.532 kb on - strand, within H281DRAFT_04819at 254.603 kb on + strand, within H281DRAFT_04819at 254.603 kb on + strand, within H281DRAFT_04819at 254.603 kb on + strand, within H281DRAFT_04819at 254.603 kb on + strand, within H281DRAFT_04819at 254.603 kb on + strand, within H281DRAFT_04819at 254.603 kb on + strand, within H281DRAFT_04819at 254.604 kb on - strand, within H281DRAFT_04819at 254.604 kb on - strand, within H281DRAFT_04819at 254.641 kb on + strand, within H281DRAFT_04819at 254.641 kb on + strand, within H281DRAFT_04819at 254.641 kb on + strand, within H281DRAFT_04819at 254.804 kb on + strandat 254.820 kb on + strandat 254.820 kb on + strandat 254.821 kb on - strandat 254.821 kb on - strandat 254.821 kb on - strandat 255.177 kb on - strand, within H281DRAFT_04820at 255.195 kb on + strand, within H281DRAFT_04820at 255.328 kb on - strand, within H281DRAFT_04820at 255.784 kb on + strandat 255.784 kb on + strandat 255.784 kb on + strandat 255.784 kb on + strandat 255.784 kb on + strandat 255.784 kb on + strandat 255.787 kb on + strandat 255.787 kb on + strandat 255.787 kb on + strandat 255.788 kb on - strandat 255.976 kb on + strandat 256.124 kb on - strand, within H281DRAFT_04821at 256.124 kb on - strand, within H281DRAFT_04821at 256.124 kb on - strand, within H281DRAFT_04821at 256.124 kb on - strand, within H281DRAFT_04821at 256.124 kb on - strand, within H281DRAFT_04821at 256.125 kb on + strand, within H281DRAFT_04821at 256.125 kb on + strand, within H281DRAFT_04821at 256.125 kb on + strand, within H281DRAFT_04821at 256.125 kb on + strand, within H281DRAFT_04821at 256.125 kb on + strand, within H281DRAFT_04821at 256.125 kb on + strand, within H281DRAFT_04821at 256.126 kb on - strand, within H281DRAFT_04821at 256.239 kb on + strand, within H281DRAFT_04821at 256.239 kb on + strand, within H281DRAFT_04821at 256.240 kb on - strand, within H281DRAFT_04821at 256.279 kb on + strand, within H281DRAFT_04821at 256.279 kb on + strand, within H281DRAFT_04821at 256.279 kb on + strand, within H281DRAFT_04821at 256.279 kb on + strand, within H281DRAFT_04821at 256.280 kb on - strand, within H281DRAFT_04821at 256.280 kb on - strand, within H281DRAFT_04821at 256.339 kb on + strand, within H281DRAFT_04821at 256.339 kb on + strand, within H281DRAFT_04821at 256.339 kb on + strand, within H281DRAFT_04821at 256.340 kb on - strand, within H281DRAFT_04821at 256.423 kb on + strand, within H281DRAFT_04821at 256.424 kb on - strand, within H281DRAFT_04821at 256.424 kb on - strand, within H281DRAFT_04821at 256.424 kb on - strand, within H281DRAFT_04821at 256.424 kb on - strand, within H281DRAFT_04821at 256.497 kb on + strand, within H281DRAFT_04821at 256.513 kb on - strand, within H281DRAFT_04821at 256.547 kb on - strand, within H281DRAFT_04821at 256.547 kb on - strand, within H281DRAFT_04821at 256.562 kb on - strand, within H281DRAFT_04821at 256.562 kb on - strand, within H281DRAFT_04821at 256.626 kb on + strand, within H281DRAFT_04821at 256.626 kb on + strand, within H281DRAFT_04821at 256.627 kb on - strand, within H281DRAFT_04821at 256.627 kb on - strand, within H281DRAFT_04821at 256.627 kb on - strand, within H281DRAFT_04821at 256.627 kb on - strand, within H281DRAFT_04821

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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254,131 + +1.0
254,132 - H281DRAFT_04819 0.20 +1.3
254,198 + H281DRAFT_04819 0.28 -2.0
254,198 + H281DRAFT_04819 0.28 -2.3
254,198 + H281DRAFT_04819 0.28 -2.8
254,198 + H281DRAFT_04819 0.28 +1.3
254,198 + H281DRAFT_04819 0.28 -0.2
254,198 + H281DRAFT_04819 0.28 -0.2
254,198 + H281DRAFT_04819 0.28 +0.6
254,198 + H281DRAFT_04819 0.28 -1.1
254,198 + H281DRAFT_04819 0.28 +0.1
254,198 + H281DRAFT_04819 0.28 -0.7
254,198 + H281DRAFT_04819 0.28 -0.3
254,198 + H281DRAFT_04819 0.28 +0.2
254,198 + H281DRAFT_04819 0.28 +1.1
254,199 - H281DRAFT_04819 0.28 +0.5
254,199 - H281DRAFT_04819 0.28 -0.4
254,199 - H281DRAFT_04819 0.28 +0.3
254,199 - H281DRAFT_04819 0.28 +0.2
254,199 - H281DRAFT_04819 0.28 -0.2
254,199 - H281DRAFT_04819 0.28 -0.1
254,199 - H281DRAFT_04819 0.28 +0.2
254,290 + H281DRAFT_04819 0.38 +0.5
254,437 + H281DRAFT_04819 0.56 +0.8
254,438 - H281DRAFT_04819 0.56 +1.4
254,438 - H281DRAFT_04819 0.56 +1.0
254,438 - H281DRAFT_04819 0.56 +0.7
254,481 + H281DRAFT_04819 0.61 +1.3
254,492 + H281DRAFT_04819 0.62 +0.9
254,492 + H281DRAFT_04819 0.62 +1.0
254,492 + H281DRAFT_04819 0.62 -1.0
254,492 + H281DRAFT_04819 0.62 +0.9
254,531 + H281DRAFT_04819 0.67 -0.4
254,531 + H281DRAFT_04819 0.67 +1.6
254,531 + H281DRAFT_04819 0.67 +0.1
254,531 + H281DRAFT_04819 0.67 +0.3
254,531 + H281DRAFT_04819 0.67 +1.1
254,531 + H281DRAFT_04819 0.67 +0.3
254,531 + H281DRAFT_04819 0.67 +0.4
254,532 - H281DRAFT_04819 0.67 -0.3
254,532 - H281DRAFT_04819 0.67 +0.1
254,532 - H281DRAFT_04819 0.67 +1.0
254,532 - H281DRAFT_04819 0.67 +0.6
254,603 + H281DRAFT_04819 0.76 +0.2
254,603 + H281DRAFT_04819 0.76 -0.9
254,603 + H281DRAFT_04819 0.76 +0.7
254,603 + H281DRAFT_04819 0.76 +0.6
254,603 + H281DRAFT_04819 0.76 +1.1
254,603 + H281DRAFT_04819 0.76 +0.8
254,604 - H281DRAFT_04819 0.76 -0.1
254,604 - H281DRAFT_04819 0.76 +0.1
254,641 + H281DRAFT_04819 0.80 +0.3
254,641 + H281DRAFT_04819 0.80 -0.1
254,641 + H281DRAFT_04819 0.80 -0.3
254,804 + -0.2
254,820 + +1.9
254,820 + +0.9
254,821 - +0.4
254,821 - +1.0
254,821 - +0.6
255,177 - H281DRAFT_04820 0.40 -0.5
255,195 + H281DRAFT_04820 0.42 +0.1
255,328 - H281DRAFT_04820 0.58 -0.5
255,784 + +0.7
255,784 + -0.3
255,784 + +0.0
255,784 + -0.2
255,784 + -0.1
255,784 + -0.2
255,787 + -0.1
255,787 + +0.3
255,787 + -2.2
255,788 - -0.2
255,976 + +2.7
256,124 - H281DRAFT_04821 0.24 -0.1
256,124 - H281DRAFT_04821 0.24 +1.6
256,124 - H281DRAFT_04821 0.24 -0.4
256,124 - H281DRAFT_04821 0.24 -0.6
256,124 - H281DRAFT_04821 0.24 +0.0
256,125 + H281DRAFT_04821 0.24 -0.5
256,125 + H281DRAFT_04821 0.24 +0.3
256,125 + H281DRAFT_04821 0.24 -0.1
256,125 + H281DRAFT_04821 0.24 +0.2
256,125 + H281DRAFT_04821 0.24 -1.5
256,125 + H281DRAFT_04821 0.24 -0.8
256,126 - H281DRAFT_04821 0.24 +0.3
256,239 + H281DRAFT_04821 0.36 -0.1
256,239 + H281DRAFT_04821 0.36 -0.3
256,240 - H281DRAFT_04821 0.37 +0.0
256,279 + H281DRAFT_04821 0.41 -0.1
256,279 + H281DRAFT_04821 0.41 +0.1
256,279 + H281DRAFT_04821 0.41 -1.9
256,279 + H281DRAFT_04821 0.41 +0.4
256,280 - H281DRAFT_04821 0.41 -0.1
256,280 - H281DRAFT_04821 0.41 +0.6
256,339 + H281DRAFT_04821 0.47 +0.2
256,339 + H281DRAFT_04821 0.47 -0.0
256,339 + H281DRAFT_04821 0.47 +0.1
256,340 - H281DRAFT_04821 0.47 +0.4
256,423 + H281DRAFT_04821 0.57 +0.2
256,424 - H281DRAFT_04821 0.57 -1.2
256,424 - H281DRAFT_04821 0.57 -0.1
256,424 - H281DRAFT_04821 0.57 -0.3
256,424 - H281DRAFT_04821 0.57 +0.1
256,497 + H281DRAFT_04821 0.65 +0.8
256,513 - H281DRAFT_04821 0.66 -0.5
256,547 - H281DRAFT_04821 0.70 -0.1
256,547 - H281DRAFT_04821 0.70 +0.2
256,562 - H281DRAFT_04821 0.72 +1.0
256,562 - H281DRAFT_04821 0.72 +0.6
256,626 + H281DRAFT_04821 0.79 +0.2
256,626 + H281DRAFT_04821 0.79 +1.0
256,627 - H281DRAFT_04821 0.79 -0.4
256,627 - H281DRAFT_04821 0.79 -0.4
256,627 - H281DRAFT_04821 0.79 +0.3
256,627 - H281DRAFT_04821 0.79 -0.9

Or see this region's nucleotide sequence