Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02189

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02187 and H281DRAFT_02188 are separated by 53 nucleotidesH281DRAFT_02188 and H281DRAFT_02189 are separated by 3 nucleotidesH281DRAFT_02189 and H281DRAFT_02190 are separated by 51 nucleotides H281DRAFT_02187: H281DRAFT_02187 - predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis /predicted sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis, at 329,977 to 330,999 _02187 H281DRAFT_02188: H281DRAFT_02188 - hypothetical protein, at 331,053 to 331,793 _02188 H281DRAFT_02189: H281DRAFT_02189 - hypothetical protein, at 331,797 to 331,991 _02189 H281DRAFT_02190: H281DRAFT_02190 - Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist, at 332,043 to 333,068 _02190 Position (kb) 331 332Strain fitness (log2 ratio) -2 -1 0 1 2at 330.841 kb on + strand, within H281DRAFT_02187at 330.842 kb on - strand, within H281DRAFT_02187at 330.842 kb on - strand, within H281DRAFT_02187at 330.990 kb on + strandat 330.998 kb on - strandat 330.998 kb on - strandat 331.054 kb on + strandat 331.054 kb on + strandat 331.055 kb on - strandat 331.055 kb on - strandat 331.055 kb on - strandat 331.646 kb on + strand, within H281DRAFT_02188at 331.646 kb on + strand, within H281DRAFT_02188at 331.647 kb on - strand, within H281DRAFT_02188at 331.647 kb on - strand, within H281DRAFT_02188at 331.769 kb on + strandat 331.770 kb on - strandat 331.817 kb on + strand, within H281DRAFT_02189at 332.116 kb on + strandat 332.117 kb on - strandat 332.266 kb on + strandat 332.570 kb on - strand, within H281DRAFT_02190at 332.608 kb on + strand, within H281DRAFT_02190at 332.609 kb on - strand, within H281DRAFT_02190at 332.609 kb on - strand, within H281DRAFT_02190at 332.669 kb on + strand, within H281DRAFT_02190at 332.669 kb on + strand, within H281DRAFT_02190at 332.669 kb on + strand, within H281DRAFT_02190at 332.669 kb on + strand, within H281DRAFT_02190at 332.670 kb on - strand, within H281DRAFT_02190at 332.670 kb on - strand, within H281DRAFT_02190at 332.741 kb on + strand, within H281DRAFT_02190at 332.741 kb on + strand, within H281DRAFT_02190at 332.741 kb on + strand, within H281DRAFT_02190at 332.742 kb on - strand, within H281DRAFT_02190at 332.742 kb on - strand, within H281DRAFT_02190at 332.742 kb on - strand, within H281DRAFT_02190at 332.761 kb on + strand, within H281DRAFT_02190at 332.762 kb on - strand, within H281DRAFT_02190at 332.860 kb on + strand, within H281DRAFT_02190at 332.860 kb on + strand, within H281DRAFT_02190at 332.861 kb on - strand, within H281DRAFT_02190at 332.905 kb on + strand, within H281DRAFT_02190at 332.905 kb on + strand, within H281DRAFT_02190at 332.920 kb on + strand, within H281DRAFT_02190at 332.920 kb on + strand, within H281DRAFT_02190at 332.921 kb on - strand, within H281DRAFT_02190at 332.939 kb on + strand, within H281DRAFT_02190at 332.939 kb on + strand, within H281DRAFT_02190at 332.940 kb on - strand, within H281DRAFT_02190at 332.940 kb on - strand, within H281DRAFT_02190at 332.940 kb on - strand, within H281DRAFT_02190at 332.940 kb on - strand, within H281DRAFT_02190at 332.951 kb on + strand, within H281DRAFT_02190at 332.955 kb on + strand, within H281DRAFT_02190at 332.956 kb on - strand, within H281DRAFT_02190

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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330,841 + H281DRAFT_02187 0.84 +0.5
330,842 - H281DRAFT_02187 0.85 -0.9
330,842 - H281DRAFT_02187 0.85 -1.6
330,990 + +0.3
330,998 - -0.3
330,998 - +0.8
331,054 + -0.0
331,054 + +0.9
331,055 - -0.9
331,055 - +0.2
331,055 - -0.6
331,646 + H281DRAFT_02188 0.80 +0.8
331,646 + H281DRAFT_02188 0.80 -0.2
331,647 - H281DRAFT_02188 0.80 +0.6
331,647 - H281DRAFT_02188 0.80 -0.2
331,769 + +0.4
331,770 - -0.3
331,817 + H281DRAFT_02189 0.10 +0.6
332,116 + +0.4
332,117 - +0.2
332,266 + +0.0
332,570 - H281DRAFT_02190 0.51 +1.8
332,608 + H281DRAFT_02190 0.55 +0.6
332,609 - H281DRAFT_02190 0.55 +0.4
332,609 - H281DRAFT_02190 0.55 +0.1
332,669 + H281DRAFT_02190 0.61 +2.3
332,669 + H281DRAFT_02190 0.61 -0.4
332,669 + H281DRAFT_02190 0.61 -0.4
332,669 + H281DRAFT_02190 0.61 +1.7
332,670 - H281DRAFT_02190 0.61 -1.8
332,670 - H281DRAFT_02190 0.61 +0.2
332,741 + H281DRAFT_02190 0.68 +0.3
332,741 + H281DRAFT_02190 0.68 -0.1
332,741 + H281DRAFT_02190 0.68 +0.3
332,742 - H281DRAFT_02190 0.68 +0.2
332,742 - H281DRAFT_02190 0.68 +0.4
332,742 - H281DRAFT_02190 0.68 +0.7
332,761 + H281DRAFT_02190 0.70 +0.5
332,762 - H281DRAFT_02190 0.70 +0.5
332,860 + H281DRAFT_02190 0.80 +0.2
332,860 + H281DRAFT_02190 0.80 -0.2
332,861 - H281DRAFT_02190 0.80 +1.0
332,905 + H281DRAFT_02190 0.84 -0.7
332,905 + H281DRAFT_02190 0.84 +1.7
332,920 + H281DRAFT_02190 0.85 -0.7
332,920 + H281DRAFT_02190 0.85 -0.4
332,921 - H281DRAFT_02190 0.86 +1.2
332,939 + H281DRAFT_02190 0.87 +0.4
332,939 + H281DRAFT_02190 0.87 -2.2
332,940 - H281DRAFT_02190 0.87 +0.4
332,940 - H281DRAFT_02190 0.87 +0.1
332,940 - H281DRAFT_02190 0.87 +0.7
332,940 - H281DRAFT_02190 0.87 +0.0
332,951 + H281DRAFT_02190 0.88 -1.3
332,955 + H281DRAFT_02190 0.89 -0.8
332,956 - H281DRAFT_02190 0.89 +0.5

Or see this region's nucleotide sequence