Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01085

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01083 and H281DRAFT_01084 overlap by 28 nucleotidesH281DRAFT_01084 and H281DRAFT_01085 are separated by 87 nucleotidesH281DRAFT_01085 and H281DRAFT_01086 are separated by 86 nucleotidesH281DRAFT_01086 and H281DRAFT_01087 are separated by 75 nucleotides H281DRAFT_01083: H281DRAFT_01083 - hypothetical protein, at 1,216,697 to 1,217,158 _01083 H281DRAFT_01084: H281DRAFT_01084 - transcriptional regulator, LysR family, at 1,217,131 to 1,218,012 _01084 H281DRAFT_01085: H281DRAFT_01085 - Membrane protein TerC, possibly involved in tellurium resistance, at 1,218,100 to 1,218,897 _01085 H281DRAFT_01086: H281DRAFT_01086 - hypothetical protein, at 1,218,984 to 1,219,277 _01086 H281DRAFT_01087: H281DRAFT_01087 - Sugar phosphate permease, at 1,219,353 to 1,220,750 _01087 Position (kb) 1218 1219Strain fitness (log2 ratio) -3 -2 -1 0 1at 1218.003 kb on - strandat 1218.014 kb on + strandat 1218.130 kb on - strandat 1218.139 kb on + strandat 1218.140 kb on - strandat 1218.799 kb on + strand, within H281DRAFT_01085at 1218.800 kb on - strand, within H281DRAFT_01085at 1218.966 kb on - strandat 1218.969 kb on - strandat 1218.969 kb on - strandat 1219.051 kb on - strand, within H281DRAFT_01086at 1219.453 kb on + strandat 1219.477 kb on + strandat 1219.629 kb on + strand, within H281DRAFT_01087at 1219.641 kb on + strand, within H281DRAFT_01087

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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1,218,003 - +0.8
1,218,014 + +0.2
1,218,130 - -0.5
1,218,139 + -0.0
1,218,140 - -0.5
1,218,799 + H281DRAFT_01085 0.88 -0.1
1,218,800 - H281DRAFT_01085 0.88 +1.1
1,218,966 - -0.9
1,218,969 - -3.1
1,218,969 - +0.3
1,219,051 - H281DRAFT_01086 0.23 -0.1
1,219,453 + +1.4
1,219,477 + +0.2
1,219,629 + H281DRAFT_01087 0.20 -0.1
1,219,641 + H281DRAFT_01087 0.21 +0.3

Or see this region's nucleotide sequence