Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00975

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00974 and H281DRAFT_00975 are separated by 58 nucleotidesH281DRAFT_00975 and H281DRAFT_00976 are separated by 112 nucleotides H281DRAFT_00974: H281DRAFT_00974 - L-alanine-DL-glutamate epimerase, at 1,091,841 to 1,093,058 _00974 H281DRAFT_00975: H281DRAFT_00975 - choline dehydrogenase, at 1,093,117 to 1,094,778 _00975 H281DRAFT_00976: H281DRAFT_00976 - LysR family transcriptional regulator, glycine cleavage system transcriptional activator, at 1,094,891 to 1,095,826 _00976 Position (kb) 1093 1094 1095Strain fitness (log2 ratio) -2 -1 0 1 2at 1092.228 kb on + strand, within H281DRAFT_00974at 1092.229 kb on - strand, within H281DRAFT_00974at 1092.229 kb on - strand, within H281DRAFT_00974at 1092.229 kb on - strand, within H281DRAFT_00974at 1092.265 kb on - strand, within H281DRAFT_00974at 1092.352 kb on - strand, within H281DRAFT_00974at 1092.745 kb on - strand, within H281DRAFT_00974at 1092.772 kb on - strand, within H281DRAFT_00974at 1093.075 kb on + strandat 1093.076 kb on - strandat 1093.113 kb on + strandat 1093.113 kb on + strandat 1093.114 kb on - strandat 1093.114 kb on - strandat 1093.130 kb on - strandat 1093.273 kb on + strandat 1093.300 kb on + strand, within H281DRAFT_00975at 1093.300 kb on + strand, within H281DRAFT_00975at 1093.300 kb on + strand, within H281DRAFT_00975at 1093.303 kb on + strand, within H281DRAFT_00975at 1093.342 kb on + strand, within H281DRAFT_00975at 1093.714 kb on + strand, within H281DRAFT_00975at 1094.015 kb on - strand, within H281DRAFT_00975at 1094.090 kb on - strand, within H281DRAFT_00975at 1094.188 kb on + strand, within H281DRAFT_00975at 1094.188 kb on + strand, within H281DRAFT_00975at 1094.530 kb on + strand, within H281DRAFT_00975at 1094.749 kb on + strandat 1095.187 kb on + strand, within H281DRAFT_00976at 1095.601 kb on + strand, within H281DRAFT_00976

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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1,092,228 + H281DRAFT_00974 0.32 -0.4
1,092,229 - H281DRAFT_00974 0.32 +0.9
1,092,229 - H281DRAFT_00974 0.32 +1.8
1,092,229 - H281DRAFT_00974 0.32 -2.2
1,092,265 - H281DRAFT_00974 0.35 -0.4
1,092,352 - H281DRAFT_00974 0.42 +1.0
1,092,745 - H281DRAFT_00974 0.74 -0.7
1,092,772 - H281DRAFT_00974 0.76 +1.6
1,093,075 + -0.2
1,093,076 - +1.0
1,093,113 + -0.2
1,093,113 + +0.7
1,093,114 - -0.1
1,093,114 - -0.2
1,093,130 - -1.6
1,093,273 + +0.6
1,093,300 + H281DRAFT_00975 0.11 -0.3
1,093,300 + H281DRAFT_00975 0.11 +0.5
1,093,300 + H281DRAFT_00975 0.11 +0.1
1,093,303 + H281DRAFT_00975 0.11 +0.6
1,093,342 + H281DRAFT_00975 0.14 +2.7
1,093,714 + H281DRAFT_00975 0.36 +1.4
1,094,015 - H281DRAFT_00975 0.54 +0.0
1,094,090 - H281DRAFT_00975 0.59 -0.9
1,094,188 + H281DRAFT_00975 0.64 +0.1
1,094,188 + H281DRAFT_00975 0.64 +0.4
1,094,530 + H281DRAFT_00975 0.85 -0.0
1,094,749 + -2.0
1,095,187 + H281DRAFT_00976 0.32 -1.2
1,095,601 + H281DRAFT_00976 0.76 +0.3

Or see this region's nucleotide sequence