Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00006

Experiment: 2'-Deoxyinosine 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00004 and H281DRAFT_00005 are separated by 155 nucleotidesH281DRAFT_00005 and H281DRAFT_00006 are separated by 504 nucleotidesH281DRAFT_00006 and H281DRAFT_00007 are separated by 207 nucleotides H281DRAFT_00004: H281DRAFT_00004 - hypothetical protein, at 4,600 to 5,139 _00004 H281DRAFT_00005: H281DRAFT_00005 - hypothetical protein, at 5,295 to 5,576 _00005 H281DRAFT_00006: H281DRAFT_00006 - hypothetical protein, at 6,081 to 6,458 _00006 H281DRAFT_00007: H281DRAFT_00007 - Site-specific DNA recombinase, at 6,666 to 8,261 _00007 Position (kb) 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1at 5.085 kb on - strand, within H281DRAFT_00004at 5.221 kb on - strandat 5.251 kb on + strandat 5.411 kb on + strand, within H281DRAFT_00005at 5.411 kb on + strand, within H281DRAFT_00005at 5.411 kb on + strand, within H281DRAFT_00005at 5.481 kb on - strand, within H281DRAFT_00005at 5.758 kb on - strandat 5.789 kb on + strandat 5.812 kb on + strandat 5.812 kb on + strandat 6.135 kb on - strand, within H281DRAFT_00006at 6.135 kb on - strand, within H281DRAFT_00006at 6.449 kb on - strandat 6.449 kb on - strandat 6.449 kb on - strandat 6.495 kb on + strandat 6.571 kb on + strandat 6.633 kb on + strandat 6.634 kb on - strandat 6.724 kb on - strandat 6.724 kb on - strandat 6.754 kb on - strandat 6.754 kb on - strandat 6.808 kb on + strandat 6.808 kb on + strandat 6.808 kb on + strandat 6.808 kb on + strandat 6.825 kb on + strandat 6.889 kb on + strand, within H281DRAFT_00007at 6.889 kb on + strand, within H281DRAFT_00007at 6.934 kb on - strand, within H281DRAFT_00007at 6.934 kb on - strand, within H281DRAFT_00007at 6.934 kb on - strand, within H281DRAFT_00007at 6.934 kb on - strand, within H281DRAFT_00007at 6.985 kb on - strand, within H281DRAFT_00007at 6.990 kb on + strand, within H281DRAFT_00007at 6.990 kb on + strand, within H281DRAFT_00007at 7.024 kb on - strand, within H281DRAFT_00007at 7.070 kb on - strand, within H281DRAFT_00007at 7.072 kb on + strand, within H281DRAFT_00007at 7.129 kb on + strand, within H281DRAFT_00007at 7.254 kb on + strand, within H281DRAFT_00007at 7.298 kb on + strand, within H281DRAFT_00007at 7.318 kb on + strand, within H281DRAFT_00007at 7.338 kb on + strand, within H281DRAFT_00007

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
remove
5,085 - H281DRAFT_00004 0.90 -0.6
5,221 - -3.3
5,251 + -0.7
5,411 + H281DRAFT_00005 0.41 +0.1
5,411 + H281DRAFT_00005 0.41 +0.6
5,411 + H281DRAFT_00005 0.41 +0.3
5,481 - H281DRAFT_00005 0.66 +0.3
5,758 - -0.2
5,789 + -0.4
5,812 + -0.2
5,812 + -0.3
6,135 - H281DRAFT_00006 0.14 -0.3
6,135 - H281DRAFT_00006 0.14 -0.6
6,449 - +0.1
6,449 - +0.8
6,449 - -1.0
6,495 + -0.1
6,571 + +1.1
6,633 + -1.1
6,634 - -0.3
6,724 - +1.1
6,724 - +0.5
6,754 - +0.3
6,754 - -0.4
6,808 + -0.8
6,808 + +0.3
6,808 + +0.4
6,808 + -0.3
6,825 + -0.4
6,889 + H281DRAFT_00007 0.14 -0.4
6,889 + H281DRAFT_00007 0.14 +0.1
6,934 - H281DRAFT_00007 0.17 -0.9
6,934 - H281DRAFT_00007 0.17 +0.3
6,934 - H281DRAFT_00007 0.17 -0.7
6,934 - H281DRAFT_00007 0.17 +1.0
6,985 - H281DRAFT_00007 0.20 +0.0
6,990 + H281DRAFT_00007 0.20 +0.5
6,990 + H281DRAFT_00007 0.20 -0.4
7,024 - H281DRAFT_00007 0.22 -0.2
7,070 - H281DRAFT_00007 0.25 +1.0
7,072 + H281DRAFT_00007 0.25 +0.3
7,129 + H281DRAFT_00007 0.29 -0.0
7,254 + H281DRAFT_00007 0.37 -0.0
7,298 + H281DRAFT_00007 0.40 -0.4
7,318 + H281DRAFT_00007 0.41 -1.4
7,338 + H281DRAFT_00007 0.42 -1.0

Or see this region's nucleotide sequence