Strain Fitness in Dechlorosoma suillum PS around Dsui_3489

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3487 and Dsui_3488 are separated by 50 nucleotidesDsui_3488 and Dsui_3489 overlap by 7 nucleotidesDsui_3489 and Dsui_3490 are separated by 18 nucleotides Dsui_3487: Dsui_3487 - Tfp pilus assembly protein PilE, at 3,752,310 to 3,752,771 _3487 Dsui_3488: Dsui_3488 - Tfp pilus assembly protein FimT, at 3,752,822 to 3,753,334 _3488 Dsui_3489: Dsui_3489 - hypothetical protein, at 3,753,328 to 3,753,705 _3489 Dsui_3490: Dsui_3490 - hypothetical protein, at 3,753,724 to 3,754,845 _3490 Position (kb) 3753 3754Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3752.447 kb on + strand, within Dsui_3487at 3752.455 kb on - strand, within Dsui_3487at 3752.474 kb on - strand, within Dsui_3487at 3752.490 kb on - strand, within Dsui_3487at 3752.512 kb on - strand, within Dsui_3487at 3752.512 kb on - strand, within Dsui_3487at 3752.542 kb on + strand, within Dsui_3487at 3752.550 kb on - strand, within Dsui_3487at 3752.640 kb on + strand, within Dsui_3487at 3752.640 kb on + strand, within Dsui_3487at 3752.679 kb on + strand, within Dsui_3487at 3752.679 kb on + strand, within Dsui_3487at 3752.735 kb on + strandat 3752.765 kb on + strandat 3752.770 kb on + strandat 3752.773 kb on - strandat 3752.773 kb on - strandat 3752.773 kb on - strandat 3752.826 kb on + strandat 3752.836 kb on + strandat 3752.902 kb on + strand, within Dsui_3488at 3752.902 kb on + strand, within Dsui_3488at 3752.902 kb on + strand, within Dsui_3488at 3752.902 kb on + strand, within Dsui_3488at 3752.902 kb on + strand, within Dsui_3488at 3752.902 kb on + strand, within Dsui_3488at 3752.902 kb on + strand, within Dsui_3488at 3752.910 kb on - strand, within Dsui_3488at 3752.910 kb on - strand, within Dsui_3488at 3752.910 kb on - strand, within Dsui_3488at 3752.958 kb on - strand, within Dsui_3488at 3752.965 kb on + strand, within Dsui_3488at 3752.968 kb on - strand, within Dsui_3488at 3752.973 kb on - strand, within Dsui_3488at 3753.010 kb on + strand, within Dsui_3488at 3753.010 kb on + strand, within Dsui_3488at 3753.010 kb on + strand, within Dsui_3488at 3753.018 kb on - strand, within Dsui_3488at 3753.023 kb on - strand, within Dsui_3488at 3753.059 kb on - strand, within Dsui_3488at 3753.062 kb on - strand, within Dsui_3488at 3753.064 kb on + strand, within Dsui_3488at 3753.090 kb on + strand, within Dsui_3488at 3753.149 kb on - strand, within Dsui_3488at 3753.296 kb on + strandat 3753.301 kb on + strandat 3753.304 kb on - strandat 3753.318 kb on + strandat 3753.333 kb on + strandat 3753.333 kb on + strandat 3753.343 kb on - strandat 3753.367 kb on - strand, within Dsui_3489at 3753.510 kb on + strand, within Dsui_3489at 3753.510 kb on + strand, within Dsui_3489at 3753.518 kb on - strand, within Dsui_3489at 3753.518 kb on - strand, within Dsui_3489at 3753.551 kb on + strand, within Dsui_3489at 3753.568 kb on + strand, within Dsui_3489at 3753.573 kb on + strand, within Dsui_3489at 3753.573 kb on + strand, within Dsui_3489at 3753.628 kb on + strand, within Dsui_3489at 3753.645 kb on - strand, within Dsui_3489at 3753.660 kb on + strand, within Dsui_3489at 3753.684 kb on - strandat 3753.709 kb on + strandat 3753.709 kb on + strandat 3753.709 kb on + strandat 3753.717 kb on - strandat 3753.717 kb on - strandat 3753.760 kb on + strandat 3753.760 kb on + strandat 3753.810 kb on + strandat 3753.881 kb on - strand, within Dsui_3490at 3753.891 kb on + strand, within Dsui_3490at 3753.920 kb on - strand, within Dsui_3490at 3753.999 kb on - strand, within Dsui_3490at 3754.033 kb on - strand, within Dsui_3490at 3754.045 kb on + strand, within Dsui_3490at 3754.148 kb on + strand, within Dsui_3490at 3754.149 kb on + strand, within Dsui_3490at 3754.172 kb on + strand, within Dsui_3490at 3754.174 kb on + strand, within Dsui_3490at 3754.180 kb on - strand, within Dsui_3490at 3754.187 kb on + strand, within Dsui_3490at 3754.195 kb on - strand, within Dsui_3490at 3754.230 kb on + strand, within Dsui_3490at 3754.310 kb on - strand, within Dsui_3490at 3754.341 kb on - strand, within Dsui_3490at 3754.386 kb on - strand, within Dsui_3490at 3754.388 kb on - strand, within Dsui_3490at 3754.423 kb on + strand, within Dsui_3490at 3754.423 kb on + strand, within Dsui_3490at 3754.468 kb on + strand, within Dsui_3490at 3754.513 kb on + strand, within Dsui_3490at 3754.531 kb on - strand, within Dsui_3490at 3754.600 kb on + strand, within Dsui_3490at 3754.608 kb on - strand, within Dsui_3490at 3754.624 kb on - strand, within Dsui_3490at 3754.634 kb on - strand, within Dsui_3490at 3754.666 kb on + strand, within Dsui_3490at 3754.674 kb on - strand, within Dsui_3490

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,752,447 + Dsui_3487 0.30 +1.5
3,752,455 - Dsui_3487 0.31 -0.4
3,752,474 - Dsui_3487 0.35 -0.0
3,752,490 - Dsui_3487 0.39 -0.0
3,752,512 - Dsui_3487 0.44 +0.6
3,752,512 - Dsui_3487 0.44 +0.2
3,752,542 + Dsui_3487 0.50 +0.2
3,752,550 - Dsui_3487 0.52 +0.1
3,752,640 + Dsui_3487 0.71 +1.3
3,752,640 + Dsui_3487 0.71 +1.6
3,752,679 + Dsui_3487 0.80 +0.9
3,752,679 + Dsui_3487 0.80 +0.7
3,752,735 + +0.9
3,752,765 + +0.0
3,752,770 + +1.2
3,752,773 - -0.3
3,752,773 - -1.1
3,752,773 - +0.0
3,752,826 + +0.8
3,752,836 + +0.6
3,752,902 + Dsui_3488 0.16 -0.1
3,752,902 + Dsui_3488 0.16 +0.1
3,752,902 + Dsui_3488 0.16 -0.1
3,752,902 + Dsui_3488 0.16 +0.0
3,752,902 + Dsui_3488 0.16 +1.7
3,752,902 + Dsui_3488 0.16 +1.1
3,752,902 + Dsui_3488 0.16 +0.3
3,752,910 - Dsui_3488 0.17 -0.3
3,752,910 - Dsui_3488 0.17 -0.2
3,752,910 - Dsui_3488 0.17 -0.7
3,752,958 - Dsui_3488 0.27 +0.3
3,752,965 + Dsui_3488 0.28 +0.7
3,752,968 - Dsui_3488 0.28 +0.2
3,752,973 - Dsui_3488 0.29 +1.4
3,753,010 + Dsui_3488 0.37 +0.6
3,753,010 + Dsui_3488 0.37 -0.0
3,753,010 + Dsui_3488 0.37 +0.7
3,753,018 - Dsui_3488 0.38 -0.4
3,753,023 - Dsui_3488 0.39 +0.1
3,753,059 - Dsui_3488 0.46 -3.9
3,753,062 - Dsui_3488 0.47 +0.1
3,753,064 + Dsui_3488 0.47 +0.8
3,753,090 + Dsui_3488 0.52 +0.5
3,753,149 - Dsui_3488 0.64 +0.2
3,753,296 + +0.8
3,753,301 + +0.8
3,753,304 - -0.2
3,753,318 + +0.8
3,753,333 + +0.6
3,753,333 + +0.7
3,753,343 - +0.5
3,753,367 - Dsui_3489 0.10 -0.3
3,753,510 + Dsui_3489 0.48 -0.0
3,753,510 + Dsui_3489 0.48 +0.2
3,753,518 - Dsui_3489 0.50 +0.4
3,753,518 - Dsui_3489 0.50 +0.7
3,753,551 + Dsui_3489 0.59 +0.6
3,753,568 + Dsui_3489 0.63 +0.7
3,753,573 + Dsui_3489 0.65 +0.8
3,753,573 + Dsui_3489 0.65 -0.1
3,753,628 + Dsui_3489 0.79 -0.6
3,753,645 - Dsui_3489 0.84 -0.5
3,753,660 + Dsui_3489 0.88 +0.3
3,753,684 - -0.0
3,753,709 + +1.1
3,753,709 + +0.3
3,753,709 + +0.8
3,753,717 - +1.3
3,753,717 - -1.1
3,753,760 + +0.8
3,753,760 + +1.2
3,753,810 + +0.4
3,753,881 - Dsui_3490 0.14 +0.8
3,753,891 + Dsui_3490 0.15 +0.0
3,753,920 - Dsui_3490 0.17 +0.1
3,753,999 - Dsui_3490 0.25 +1.1
3,754,033 - Dsui_3490 0.28 +0.7
3,754,045 + Dsui_3490 0.29 -0.2
3,754,148 + Dsui_3490 0.38 +0.6
3,754,149 + Dsui_3490 0.38 +0.4
3,754,172 + Dsui_3490 0.40 +0.2
3,754,174 + Dsui_3490 0.40 +0.2
3,754,180 - Dsui_3490 0.41 +0.2
3,754,187 + Dsui_3490 0.41 +0.4
3,754,195 - Dsui_3490 0.42 -0.2
3,754,230 + Dsui_3490 0.45 +0.8
3,754,310 - Dsui_3490 0.52 -0.4
3,754,341 - Dsui_3490 0.55 -0.1
3,754,386 - Dsui_3490 0.59 -0.6
3,754,388 - Dsui_3490 0.59 -1.2
3,754,423 + Dsui_3490 0.62 +0.4
3,754,423 + Dsui_3490 0.62 +0.1
3,754,468 + Dsui_3490 0.66 +0.7
3,754,513 + Dsui_3490 0.70 +0.6
3,754,531 - Dsui_3490 0.72 +0.5
3,754,600 + Dsui_3490 0.78 +0.7
3,754,608 - Dsui_3490 0.79 -1.1
3,754,624 - Dsui_3490 0.80 +0.9
3,754,634 - Dsui_3490 0.81 +0.9
3,754,666 + Dsui_3490 0.84 +1.0
3,754,674 - Dsui_3490 0.85 -0.0

Or see this region's nucleotide sequence