Strain Fitness in Dechlorosoma suillum PS around Dsui_3311

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3309 and Dsui_3310 are separated by 327 nucleotidesDsui_3310 and Dsui_3311 are separated by 8 nucleotidesDsui_3311 and Dsui_3312 are separated by 25 nucleotidesDsui_3312 and Dsui_3313 are separated by 63 nucleotides Dsui_3309: Dsui_3309 - nitrous oxide reductase, at 3,550,554 to 3,552,851 _3309 Dsui_3310: Dsui_3310 - hypothetical protein, at 3,553,179 to 3,553,655 _3310 Dsui_3311: Dsui_3311 - uncharacterized protein SCO1/SenC/PrrC, at 3,553,664 to 3,554,260 _3311 Dsui_3312: Dsui_3312 - hypothetical protein, at 3,554,286 to 3,554,783 _3312 Dsui_3313: Dsui_3313 - hypothetical protein, at 3,554,847 to 3,555,242 _3313 Position (kb) 3553 3554 3555Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3552.707 kb on - strandat 3552.717 kb on - strandat 3552.736 kb on - strandat 3552.738 kb on - strandat 3552.742 kb on - strandat 3552.816 kb on - strandat 3552.833 kb on + strandat 3552.841 kb on - strandat 3552.841 kb on - strandat 3552.898 kb on - strandat 3552.904 kb on + strandat 3552.920 kb on - strandat 3552.930 kb on - strandat 3552.935 kb on + strandat 3552.943 kb on + strandat 3552.954 kb on - strandat 3552.980 kb on + strandat 3552.998 kb on + strandat 3553.005 kb on + strandat 3553.023 kb on + strandat 3553.039 kb on + strandat 3553.039 kb on + strandat 3553.091 kb on + strandat 3553.134 kb on + strandat 3553.134 kb on + strandat 3553.148 kb on + strandat 3553.164 kb on + strandat 3553.662 kb on - strandat 3553.671 kb on + strandat 3553.671 kb on + strandat 3553.671 kb on + strandat 3553.701 kb on - strandat 3553.880 kb on - strand, within Dsui_3311at 3553.948 kb on + strand, within Dsui_3311at 3553.949 kb on + strand, within Dsui_3311at 3553.949 kb on + strand, within Dsui_3311at 3553.956 kb on - strand, within Dsui_3311at 3553.956 kb on - strand, within Dsui_3311at 3553.956 kb on - strand, within Dsui_3311at 3553.960 kb on + strand, within Dsui_3311at 3553.987 kb on - strand, within Dsui_3311at 3554.039 kb on + strand, within Dsui_3311at 3554.039 kb on + strand, within Dsui_3311at 3554.080 kb on + strand, within Dsui_3311at 3554.135 kb on - strand, within Dsui_3311at 3554.140 kb on - strand, within Dsui_3311at 3554.245 kb on + strandat 3554.253 kb on - strandat 3554.321 kb on + strandat 3554.326 kb on + strandat 3554.326 kb on + strandat 3554.397 kb on + strand, within Dsui_3312at 3554.496 kb on - strand, within Dsui_3312at 3554.623 kb on + strand, within Dsui_3312at 3554.629 kb on + strand, within Dsui_3312at 3554.631 kb on - strand, within Dsui_3312at 3554.643 kb on - strand, within Dsui_3312at 3554.659 kb on + strand, within Dsui_3312at 3554.770 kb on - strandat 3554.777 kb on + strandat 3554.845 kb on + strandat 3554.853 kb on - strandat 3554.855 kb on + strandat 3554.855 kb on + strandat 3554.863 kb on - strandat 3554.869 kb on + strandat 3554.911 kb on - strand, within Dsui_3313at 3555.015 kb on - strand, within Dsui_3313at 3555.080 kb on + strandat 3555.105 kb on + strand, within Dsui_3313at 3555.113 kb on - strand, within Dsui_3313at 3555.225 kb on - strandat 3555.251 kb on + strandat 3555.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,552,707 - +2.0
3,552,717 - +1.0
3,552,736 - +1.0
3,552,738 - +1.6
3,552,742 - +0.8
3,552,816 - +1.6
3,552,833 + +0.4
3,552,841 - +1.4
3,552,841 - +1.6
3,552,898 - +1.6
3,552,904 + -2.5
3,552,920 - +1.4
3,552,930 - +0.7
3,552,935 + -0.9
3,552,943 + +0.6
3,552,954 - +0.2
3,552,980 + +0.9
3,552,998 + -3.4
3,553,005 + +0.5
3,553,023 + +0.2
3,553,039 + +0.5
3,553,039 + +0.1
3,553,091 + -1.2
3,553,134 + -0.2
3,553,134 + +0.6
3,553,148 + +0.6
3,553,164 + +0.8
3,553,662 - -0.0
3,553,671 + -0.3
3,553,671 + +0.8
3,553,671 + -0.5
3,553,701 - -0.1
3,553,880 - Dsui_3311 0.36 -0.3
3,553,948 + Dsui_3311 0.48 +0.1
3,553,949 + Dsui_3311 0.48 +0.0
3,553,949 + Dsui_3311 0.48 -0.3
3,553,956 - Dsui_3311 0.49 -0.2
3,553,956 - Dsui_3311 0.49 +0.3
3,553,956 - Dsui_3311 0.49 +0.0
3,553,960 + Dsui_3311 0.50 +0.5
3,553,987 - Dsui_3311 0.54 -1.6
3,554,039 + Dsui_3311 0.63 +0.2
3,554,039 + Dsui_3311 0.63 -1.1
3,554,080 + Dsui_3311 0.70 +1.1
3,554,135 - Dsui_3311 0.79 +0.2
3,554,140 - Dsui_3311 0.80 -1.1
3,554,245 + +0.1
3,554,253 - +1.0
3,554,321 + +0.3
3,554,326 + +0.2
3,554,326 + -0.8
3,554,397 + Dsui_3312 0.22 +0.2
3,554,496 - Dsui_3312 0.42 -1.0
3,554,623 + Dsui_3312 0.68 -0.4
3,554,629 + Dsui_3312 0.69 +0.5
3,554,631 - Dsui_3312 0.69 -1.3
3,554,643 - Dsui_3312 0.72 -0.9
3,554,659 + Dsui_3312 0.75 -2.0
3,554,770 - -0.7
3,554,777 + -0.8
3,554,845 + -1.7
3,554,853 - +0.7
3,554,855 + +0.7
3,554,855 + +0.2
3,554,863 - +1.0
3,554,869 + +0.3
3,554,911 - Dsui_3313 0.16 +0.7
3,555,015 - Dsui_3313 0.42 +0.6
3,555,080 + +0.2
3,555,105 + Dsui_3313 0.65 +0.1
3,555,113 - Dsui_3313 0.67 +0.9
3,555,225 - +1.4
3,555,251 + -0.2
3,555,260 - +1.2

Or see this region's nucleotide sequence