Strain Fitness in Dechlorosoma suillum PS around Dsui_2419

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2418 and Dsui_2419 are separated by 129 nucleotidesDsui_2419 and Dsui_2420 are separated by 99 nucleotides Dsui_2418: Dsui_2418 - peptide chain release factor 3, at 2,572,808 to 2,574,409 _2418 Dsui_2419: Dsui_2419 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,574,539 to 2,577,538 _2419 Dsui_2420: Dsui_2420 - uncharacterized radical SAM protein YgiQ, at 2,577,638 to 2,579,956 _2420 Position (kb) 2574 2575 2576 2577 2578Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2573.545 kb on + strand, within Dsui_2418at 2573.637 kb on + strand, within Dsui_2418at 2573.715 kb on - strand, within Dsui_2418at 2573.752 kb on + strand, within Dsui_2418at 2573.760 kb on - strandat 2573.766 kb on + strand, within Dsui_2418at 2573.838 kb on + strand, within Dsui_2418at 2573.846 kb on - strand, within Dsui_2418at 2573.859 kb on + strand, within Dsui_2418at 2573.991 kb on + strand, within Dsui_2418at 2574.019 kb on + strand, within Dsui_2418at 2574.028 kb on + strand, within Dsui_2418at 2574.028 kb on + strand, within Dsui_2418at 2574.038 kb on + strand, within Dsui_2418at 2574.046 kb on - strandat 2574.106 kb on + strand, within Dsui_2418at 2574.142 kb on + strand, within Dsui_2418at 2574.324 kb on + strandat 2574.332 kb on - strandat 2574.369 kb on - strandat 2574.384 kb on + strandat 2574.384 kb on + strandat 2574.416 kb on - strandat 2574.535 kb on + strandat 2574.551 kb on + strandat 2574.563 kb on - strandat 2574.591 kb on + strandat 2574.591 kb on + strandat 2574.591 kb on + strandat 2574.591 kb on + strandat 2574.591 kb on + strandat 2574.591 kb on + strandat 2574.591 kb on + strandat 2574.594 kb on - strandat 2574.793 kb on + strandat 2574.803 kb on + strandat 2574.949 kb on - strandat 2574.965 kb on - strandat 2574.971 kb on - strand, within Dsui_2419at 2575.010 kb on - strandat 2575.059 kb on + strand, within Dsui_2419at 2575.110 kb on + strand, within Dsui_2419at 2575.118 kb on - strand, within Dsui_2419at 2575.233 kb on + strand, within Dsui_2419at 2575.287 kb on + strand, within Dsui_2419at 2575.295 kb on - strandat 2575.393 kb on + strand, within Dsui_2419at 2575.404 kb on + strand, within Dsui_2419at 2575.412 kb on - strandat 2575.422 kb on - strandat 2575.440 kb on - strandat 2575.635 kb on - strandat 2575.749 kb on + strand, within Dsui_2419at 2575.841 kb on + strand, within Dsui_2419at 2575.869 kb on - strandat 2575.898 kb on - strandat 2575.899 kb on + strand, within Dsui_2419at 2575.922 kb on + strand, within Dsui_2419at 2575.931 kb on - strandat 2575.986 kb on + strand, within Dsui_2419at 2576.002 kb on - strand, within Dsui_2419at 2576.068 kb on - strandat 2576.075 kb on + strand, within Dsui_2419at 2576.075 kb on + strand, within Dsui_2419at 2576.080 kb on + strand, within Dsui_2419at 2576.083 kb on - strand, within Dsui_2419at 2576.084 kb on - strand, within Dsui_2419at 2576.097 kb on + strand, within Dsui_2419at 2576.133 kb on - strand, within Dsui_2419at 2576.139 kb on + strand, within Dsui_2419at 2576.364 kb on - strandat 2576.399 kb on - strand, within Dsui_2419at 2576.479 kb on + strand, within Dsui_2419at 2576.479 kb on + strand, within Dsui_2419at 2576.479 kb on + strand, within Dsui_2419at 2576.563 kb on - strandat 2576.564 kb on + strand, within Dsui_2419at 2576.660 kb on - strandat 2576.692 kb on - strand, within Dsui_2419at 2576.710 kb on + strand, within Dsui_2419at 2576.756 kb on + strand, within Dsui_2419at 2577.088 kb on + strand, within Dsui_2419at 2577.169 kb on + strand, within Dsui_2419at 2577.189 kb on + strand, within Dsui_2419at 2577.207 kb on + strand, within Dsui_2419at 2577.328 kb on - strandat 2577.424 kb on + strandat 2577.447 kb on + strandat 2577.450 kb on - strandat 2577.533 kb on + strandat 2577.597 kb on + strandat 2577.646 kb on + strandat 2577.693 kb on + strandat 2577.761 kb on + strandat 2577.809 kb on + strandat 2577.840 kb on - strandat 2577.881 kb on + strand, within Dsui_2420at 2577.896 kb on + strand, within Dsui_2420at 2577.906 kb on + strand, within Dsui_2420at 2577.948 kb on - strandat 2578.185 kb on - strandat 2578.370 kb on + strand, within Dsui_2420at 2578.370 kb on + strand, within Dsui_2420at 2578.419 kb on + strand, within Dsui_2420at 2578.449 kb on + strand, within Dsui_2420

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,573,545 + Dsui_2418 0.46 +0.9
2,573,637 + Dsui_2418 0.52 +0.3
2,573,715 - Dsui_2418 0.57 -3.2
2,573,752 + Dsui_2418 0.59 +0.4
2,573,760 - -2.4
2,573,766 + Dsui_2418 0.60 +0.8
2,573,838 + Dsui_2418 0.64 +0.4
2,573,846 - Dsui_2418 0.65 -1.1
2,573,859 + Dsui_2418 0.66 +0.8
2,573,991 + Dsui_2418 0.74 +0.8
2,574,019 + Dsui_2418 0.76 +0.5
2,574,028 + Dsui_2418 0.76 +0.1
2,574,028 + Dsui_2418 0.76 +1.0
2,574,038 + Dsui_2418 0.77 +1.0
2,574,046 - -0.6
2,574,106 + Dsui_2418 0.81 +0.9
2,574,142 + Dsui_2418 0.83 +1.2
2,574,324 + +1.3
2,574,332 - -2.3
2,574,369 - -0.1
2,574,384 + +1.1
2,574,384 + +0.2
2,574,416 - -0.6
2,574,535 + +1.2
2,574,551 + +0.9
2,574,563 - -1.1
2,574,591 + +1.2
2,574,591 + +1.0
2,574,591 + +0.9
2,574,591 + +2.1
2,574,591 + +0.5
2,574,591 + +1.0
2,574,591 + +1.6
2,574,594 - +0.4
2,574,793 + +1.3
2,574,803 + +1.1
2,574,949 - -3.1
2,574,965 - -1.8
2,574,971 - Dsui_2419 0.14 -3.5
2,575,010 - +3.3
2,575,059 + Dsui_2419 0.17 +1.0
2,575,110 + Dsui_2419 0.19 +1.2
2,575,118 - Dsui_2419 0.19 -0.8
2,575,233 + Dsui_2419 0.23 +0.9
2,575,287 + Dsui_2419 0.25 +1.9
2,575,295 - -2.2
2,575,393 + Dsui_2419 0.28 +0.7
2,575,404 + Dsui_2419 0.29 +1.5
2,575,412 - -1.3
2,575,422 - -2.4
2,575,440 - -0.4
2,575,635 - -0.6
2,575,749 + Dsui_2419 0.40 +1.3
2,575,841 + Dsui_2419 0.43 +0.2
2,575,869 - -2.9
2,575,898 - -1.8
2,575,899 + Dsui_2419 0.45 +1.2
2,575,922 + Dsui_2419 0.46 +1.8
2,575,931 - -0.7
2,575,986 + Dsui_2419 0.48 +2.1
2,576,002 - Dsui_2419 0.49 -4.4
2,576,068 - +1.0
2,576,075 + Dsui_2419 0.51 +1.6
2,576,075 + Dsui_2419 0.51 +1.5
2,576,080 + Dsui_2419 0.51 +1.4
2,576,083 - Dsui_2419 0.51 -0.5
2,576,084 - Dsui_2419 0.52 -3.2
2,576,097 + Dsui_2419 0.52 +0.7
2,576,133 - Dsui_2419 0.53 -0.2
2,576,139 + Dsui_2419 0.53 +1.5
2,576,364 - -1.0
2,576,399 - Dsui_2419 0.62 -1.1
2,576,479 + Dsui_2419 0.65 +0.4
2,576,479 + Dsui_2419 0.65 +0.9
2,576,479 + Dsui_2419 0.65 +1.3
2,576,563 - -1.2
2,576,564 + Dsui_2419 0.68 +1.2
2,576,660 - -3.2
2,576,692 - Dsui_2419 0.72 -1.3
2,576,710 + Dsui_2419 0.72 +1.2
2,576,756 + Dsui_2419 0.74 +1.0
2,577,088 + Dsui_2419 0.85 +0.9
2,577,169 + Dsui_2419 0.88 +0.7
2,577,189 + Dsui_2419 0.88 +2.0
2,577,207 + Dsui_2419 0.89 +1.3
2,577,328 - -3.7
2,577,424 + +1.9
2,577,447 + +0.7
2,577,450 - +0.9
2,577,533 + +0.4
2,577,597 + +1.3
2,577,646 + +1.1
2,577,693 + +0.8
2,577,761 + +0.2
2,577,809 + +0.7
2,577,840 - -2.6
2,577,881 + Dsui_2420 0.10 +0.9
2,577,896 + Dsui_2420 0.11 +0.6
2,577,906 + Dsui_2420 0.12 +1.8
2,577,948 - +0.0
2,578,185 - +0.6
2,578,370 + Dsui_2420 0.32 +2.1
2,578,370 + Dsui_2420 0.32 +1.1
2,578,419 + Dsui_2420 0.34 +1.9
2,578,449 + Dsui_2420 0.35 +1.4

Or see this region's nucleotide sequence