Strain Fitness in Dechlorosoma suillum PS around Dsui_2301

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2299 and Dsui_2300 are separated by 57 nucleotidesDsui_2300 and Dsui_2301 are separated by 180 nucleotidesDsui_2301 and Dsui_2302 are separated by 73 nucleotides Dsui_2299: Dsui_2299 - flavin-dependent dehydrogenase, at 2,453,467 to 2,455,113 _2299 Dsui_2300: Dsui_2300 - hypothetical protein, at 2,455,171 to 2,455,863 _2300 Dsui_2301: Dsui_2301 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,456,044 to 2,458,458 _2301 Dsui_2302: Dsui_2302 - acyl-CoA dehydrogenase, at 2,458,532 to 2,460,325 _2302 Position (kb) 2456 2457 2458 2459Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2455.179 kb on - strandat 2455.184 kb on + strandat 2455.192 kb on - strandat 2455.210 kb on + strandat 2455.210 kb on + strandat 2455.238 kb on - strandat 2455.303 kb on + strand, within Dsui_2300at 2455.370 kb on + strandat 2455.437 kb on + strand, within Dsui_2300at 2455.464 kb on + strand, within Dsui_2300at 2455.464 kb on + strand, within Dsui_2300at 2455.590 kb on - strand, within Dsui_2300at 2455.604 kb on + strand, within Dsui_2300at 2455.647 kb on - strand, within Dsui_2300at 2455.666 kb on + strand, within Dsui_2300at 2455.666 kb on - strand, within Dsui_2300at 2455.721 kb on - strandat 2455.772 kb on - strand, within Dsui_2300at 2455.773 kb on - strandat 2455.848 kb on + strandat 2455.901 kb on + strandat 2455.901 kb on + strandat 2455.911 kb on + strandat 2455.919 kb on - strandat 2455.919 kb on - strandat 2456.015 kb on + strandat 2456.243 kb on + strandat 2456.420 kb on + strand, within Dsui_2301at 2456.439 kb on - strandat 2456.579 kb on - strand, within Dsui_2301at 2456.623 kb on + strandat 2456.631 kb on + strand, within Dsui_2301at 2456.637 kb on - strand, within Dsui_2301at 2456.787 kb on + strand, within Dsui_2301at 2456.872 kb on + strand, within Dsui_2301at 2456.933 kb on + strand, within Dsui_2301at 2456.974 kb on + strand, within Dsui_2301at 2456.974 kb on + strand, within Dsui_2301at 2456.986 kb on + strand, within Dsui_2301at 2457.178 kb on + strand, within Dsui_2301at 2457.330 kb on - strand, within Dsui_2301at 2457.385 kb on - strandat 2457.413 kb on - strand, within Dsui_2301at 2457.490 kb on + strand, within Dsui_2301at 2457.531 kb on + strand, within Dsui_2301at 2457.531 kb on + strand, within Dsui_2301at 2457.531 kb on + strand, within Dsui_2301at 2457.578 kb on - strandat 2457.725 kb on + strandat 2457.755 kb on + strand, within Dsui_2301at 2457.765 kb on + strand, within Dsui_2301at 2457.768 kb on - strand, within Dsui_2301at 2457.772 kb on + strand, within Dsui_2301at 2457.794 kb on - strand, within Dsui_2301at 2457.829 kb on + strand, within Dsui_2301at 2457.836 kb on + strandat 2457.975 kb on + strandat 2457.983 kb on - strand, within Dsui_2301at 2458.022 kb on + strand, within Dsui_2301at 2458.022 kb on + strand, within Dsui_2301at 2458.029 kb on - strand, within Dsui_2301at 2458.113 kb on + strand, within Dsui_2301at 2458.157 kb on + strand, within Dsui_2301at 2458.157 kb on + strand, within Dsui_2301at 2458.178 kb on - strand, within Dsui_2301at 2458.209 kb on + strandat 2458.236 kb on - strandat 2458.346 kb on - strandat 2458.437 kb on - strandat 2458.499 kb on - strandat 2458.504 kb on - strandat 2458.623 kb on + strandat 2458.779 kb on + strand, within Dsui_2302at 2458.787 kb on - strand, within Dsui_2302at 2459.119 kb on + strand, within Dsui_2302at 2459.132 kb on - strand, within Dsui_2302at 2459.135 kb on - strand, within Dsui_2302at 2459.168 kb on - strand, within Dsui_2302at 2459.245 kb on - strand, within Dsui_2302at 2459.383 kb on + strand, within Dsui_2302at 2459.412 kb on - strand, within Dsui_2302

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,455,179 - -1.5
2,455,184 + +1.9
2,455,192 - -2.8
2,455,210 + +0.0
2,455,210 + -0.1
2,455,238 - +1.1
2,455,303 + Dsui_2300 0.19 -1.6
2,455,370 + -1.0
2,455,437 + Dsui_2300 0.38 +1.2
2,455,464 + Dsui_2300 0.42 +2.0
2,455,464 + Dsui_2300 0.42 +1.1
2,455,590 - Dsui_2300 0.60 -1.6
2,455,604 + Dsui_2300 0.62 -0.1
2,455,647 - Dsui_2300 0.69 -2.3
2,455,666 + Dsui_2300 0.71 -0.1
2,455,666 - Dsui_2300 0.71 -0.4
2,455,721 - -0.0
2,455,772 - Dsui_2300 0.87 -2.6
2,455,773 - -2.6
2,455,848 + +0.2
2,455,901 + -0.4
2,455,901 + -0.5
2,455,911 + -0.0
2,455,919 - -3.1
2,455,919 - -2.5
2,456,015 + -1.0
2,456,243 + -0.7
2,456,420 + Dsui_2301 0.16 -0.9
2,456,439 - +0.6
2,456,579 - Dsui_2301 0.22 -3.7
2,456,623 + -0.6
2,456,631 + Dsui_2301 0.24 -1.0
2,456,637 - Dsui_2301 0.25 -2.6
2,456,787 + Dsui_2301 0.31 +0.5
2,456,872 + Dsui_2301 0.34 -0.2
2,456,933 + Dsui_2301 0.37 -1.8
2,456,974 + Dsui_2301 0.39 +0.2
2,456,974 + Dsui_2301 0.39 -4.4
2,456,986 + Dsui_2301 0.39 -0.4
2,457,178 + Dsui_2301 0.47 -4.0
2,457,330 - Dsui_2301 0.53 +0.4
2,457,385 - -1.0
2,457,413 - Dsui_2301 0.57 -0.6
2,457,490 + Dsui_2301 0.60 -1.2
2,457,531 + Dsui_2301 0.62 -3.3
2,457,531 + Dsui_2301 0.62 -1.0
2,457,531 + Dsui_2301 0.62 +2.5
2,457,578 - +0.6
2,457,725 + -0.0
2,457,755 + Dsui_2301 0.71 -4.0
2,457,765 + Dsui_2301 0.71 -3.2
2,457,768 - Dsui_2301 0.71 -2.0
2,457,772 + Dsui_2301 0.72 -2.3
2,457,794 - Dsui_2301 0.72 -2.3
2,457,829 + Dsui_2301 0.74 -3.0
2,457,836 + -2.8
2,457,975 + -1.1
2,457,983 - Dsui_2301 0.80 -0.4
2,458,022 + Dsui_2301 0.82 -1.6
2,458,022 + Dsui_2301 0.82 -1.6
2,458,029 - Dsui_2301 0.82 +0.2
2,458,113 + Dsui_2301 0.86 -1.2
2,458,157 + Dsui_2301 0.87 +0.8
2,458,157 + Dsui_2301 0.87 +0.5
2,458,178 - Dsui_2301 0.88 -1.0
2,458,209 + -1.3
2,458,236 - -1.3
2,458,346 - +0.2
2,458,437 - -1.6
2,458,499 - +0.7
2,458,504 - +0.7
2,458,623 + +1.3
2,458,779 + Dsui_2302 0.14 -1.7
2,458,787 - Dsui_2302 0.14 -0.1
2,459,119 + Dsui_2302 0.33 -3.4
2,459,132 - Dsui_2302 0.33 -0.7
2,459,135 - Dsui_2302 0.34 -0.6
2,459,168 - Dsui_2302 0.35 +1.0
2,459,245 - Dsui_2302 0.40 -0.6
2,459,383 + Dsui_2302 0.47 -0.2
2,459,412 - Dsui_2302 0.49 +0.2

Or see this region's nucleotide sequence