Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1494 and Dsui_1495 are separated by 78 nucleotides Dsui_1495 and Dsui_1496 are separated by 22 nucleotides Dsui_1496 and Dsui_1497 are separated by 102 nucleotides
Dsui_1494: Dsui_1494 - ATP-dependent metalloprotease FtsH, at 1,557,905 to 1,559,734
_1494
Dsui_1495: Dsui_1495 - molecular chaperone (small heat shock protein), at 1,559,813 to 1,560,271
_1495
Dsui_1496: Dsui_1496 - YfdX protein, at 1,560,294 to 1,561,208
_1496
Dsui_1497: Dsui_1497 - YfdX protein, at 1,561,311 to 1,562,198
_1497
Position (kb)
1560
1561
1562 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1559.543 kb on + strand, within Dsui_1494 at 1559.743 kb on + strand at 1559.748 kb on + strand at 1559.769 kb on - strand at 1559.994 kb on + strand, within Dsui_1495 at 1560.170 kb on - strand, within Dsui_1495 at 1560.220 kb on + strand, within Dsui_1495 at 1560.228 kb on - strand at 1560.228 kb on - strand at 1560.292 kb on - strand at 1560.306 kb on - strand at 1560.308 kb on + strand at 1560.326 kb on - strand at 1560.366 kb on + strand at 1560.366 kb on + strand at 1560.374 kb on - strand at 1560.374 kb on - strand at 1560.374 kb on - strand at 1560.420 kb on - strand, within Dsui_1496 at 1560.557 kb on + strand, within Dsui_1496 at 1560.657 kb on - strand, within Dsui_1496 at 1560.657 kb on - strand, within Dsui_1496 at 1560.691 kb on - strand, within Dsui_1496 at 1560.728 kb on + strand, within Dsui_1496 at 1560.889 kb on - strand, within Dsui_1496 at 1560.911 kb on + strand, within Dsui_1496 at 1560.915 kb on - strand, within Dsui_1496 at 1561.020 kb on + strand, within Dsui_1496 at 1561.022 kb on + strand, within Dsui_1496 at 1561.022 kb on + strand, within Dsui_1496 at 1561.022 kb on + strand, within Dsui_1496 at 1561.030 kb on - strand, within Dsui_1496 at 1561.061 kb on - strand, within Dsui_1496 at 1561.070 kb on + strand, within Dsui_1496 at 1561.078 kb on - strand, within Dsui_1496 at 1561.078 kb on - strand, within Dsui_1496 at 1561.091 kb on + strand, within Dsui_1496 at 1561.126 kb on - strand at 1561.168 kb on + strand at 1561.241 kb on + strand at 1561.390 kb on + strand at 1561.402 kb on + strand, within Dsui_1497 at 1561.403 kb on + strand, within Dsui_1497 at 1561.405 kb on - strand, within Dsui_1497 at 1561.410 kb on - strand, within Dsui_1497 at 1561.411 kb on - strand, within Dsui_1497 at 1561.429 kb on - strand, within Dsui_1497 at 1561.556 kb on + strand, within Dsui_1497 at 1561.562 kb on + strand, within Dsui_1497 at 1561.596 kb on - strand, within Dsui_1497 at 1561.618 kb on + strand, within Dsui_1497 at 1561.633 kb on + strand, within Dsui_1497 at 1561.656 kb on - strand, within Dsui_1497 at 1561.722 kb on - strand, within Dsui_1497 at 1561.855 kb on + strand, within Dsui_1497 at 1562.030 kb on - strand, within Dsui_1497 at 1562.053 kb on + strand, within Dsui_1497 at 1562.069 kb on - strand, within Dsui_1497 at 1562.096 kb on + strand, within Dsui_1497 at 1562.109 kb on - strand, within Dsui_1497 at 1562.173 kb on + strand at 1562.201 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 1,559,543 + Dsui_1494 0.90 +0.2 1,559,743 + -0.6 1,559,748 + +0.2 1,559,769 - -0.9 1,559,994 + Dsui_1495 0.39 +0.1 1,560,170 - Dsui_1495 0.78 +1.1 1,560,220 + Dsui_1495 0.89 -0.8 1,560,228 - -1.8 1,560,228 - -2.0 1,560,292 - -0.0 1,560,306 - -0.8 1,560,308 + +0.3 1,560,326 - +1.0 1,560,366 + -0.4 1,560,366 + -0.7 1,560,374 - +1.2 1,560,374 - -0.0 1,560,374 - +0.0 1,560,420 - Dsui_1496 0.14 -2.8 1,560,557 + Dsui_1496 0.29 +0.3 1,560,657 - Dsui_1496 0.40 -0.5 1,560,657 - Dsui_1496 0.40 -0.9 1,560,691 - Dsui_1496 0.43 +0.9 1,560,728 + Dsui_1496 0.47 -0.9 1,560,889 - Dsui_1496 0.65 -0.5 1,560,911 + Dsui_1496 0.67 +0.2 1,560,915 - Dsui_1496 0.68 +0.9 1,561,020 + Dsui_1496 0.79 +0.2 1,561,022 + Dsui_1496 0.80 +0.3 1,561,022 + Dsui_1496 0.80 +0.9 1,561,022 + Dsui_1496 0.80 +0.4 1,561,030 - Dsui_1496 0.80 +1.0 1,561,061 - Dsui_1496 0.84 -0.1 1,561,070 + Dsui_1496 0.85 -0.3 1,561,078 - Dsui_1496 0.86 -0.8 1,561,078 - Dsui_1496 0.86 +0.2 1,561,091 + Dsui_1496 0.87 +0.8 1,561,126 - +0.0 1,561,168 + +0.4 1,561,241 + +0.4 1,561,390 + +0.1 1,561,402 + Dsui_1497 0.10 -3.3 1,561,403 + Dsui_1497 0.10 +0.0 1,561,405 - Dsui_1497 0.11 -1.4 1,561,410 - Dsui_1497 0.11 -0.3 1,561,411 - Dsui_1497 0.11 -1.1 1,561,429 - Dsui_1497 0.13 -0.2 1,561,556 + Dsui_1497 0.28 +0.8 1,561,562 + Dsui_1497 0.28 +0.4 1,561,596 - Dsui_1497 0.32 -1.8 1,561,618 + Dsui_1497 0.35 +0.8 1,561,633 + Dsui_1497 0.36 +0.2 1,561,656 - Dsui_1497 0.39 -0.9 1,561,722 - Dsui_1497 0.46 +0.4 1,561,855 + Dsui_1497 0.61 +0.7 1,562,030 - Dsui_1497 0.81 -0.2 1,562,053 + Dsui_1497 0.84 -1.8 1,562,069 - Dsui_1497 0.85 -0.1 1,562,096 + Dsui_1497 0.88 +0.7 1,562,109 - Dsui_1497 0.90 +0.9 1,562,173 + +0.5 1,562,201 + -0.2
Or see this region's nucleotide sequence