Strain Fitness in Dechlorosoma suillum PS around Dsui_1182

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1181 and Dsui_1182 are separated by 72 nucleotidesDsui_1182 and Dsui_1183 overlap by 4 nucleotidesDsui_1183 and Dsui_1184 are separated by 120 nucleotidesDsui_1184 and Dsui_1185 are separated by 39 nucleotides Dsui_1181: Dsui_1181 - signal transduction histidine kinase, at 1,234,133 to 1,235,533 _1181 Dsui_1182: Dsui_1182 - diaminopimelate decarboxylase, at 1,235,606 to 1,236,862 _1182 Dsui_1183: Dsui_1183 - hypothetical protein, at 1,236,859 to 1,237,032 _1183 Dsui_1184: Dsui_1184 - iron donor protein CyaY, at 1,237,153 to 1,237,470 _1184 Dsui_1185: Dsui_1185 - hypothetical protein involved in intracellular sulfur reduction, at 1,237,510 to 1,237,866 _1185 Position (kb) 1235 1236 1237Strain fitness (log2 ratio) -2 -1 0 1 2at 1234.648 kb on + strand, within Dsui_1181at 1234.683 kb on - strand, within Dsui_1181at 1234.683 kb on - strand, within Dsui_1181at 1234.683 kb on - strand, within Dsui_1181at 1234.684 kb on - strand, within Dsui_1181at 1234.714 kb on + strand, within Dsui_1181at 1234.714 kb on + strand, within Dsui_1181at 1234.729 kb on - strand, within Dsui_1181at 1234.759 kb on + strand, within Dsui_1181at 1234.825 kb on + strand, within Dsui_1181at 1234.845 kb on + strand, within Dsui_1181at 1234.847 kb on + strand, within Dsui_1181at 1234.860 kb on + strandat 1234.894 kb on + strand, within Dsui_1181at 1234.989 kb on - strand, within Dsui_1181at 1235.245 kb on + strand, within Dsui_1181at 1235.303 kb on - strand, within Dsui_1181at 1235.321 kb on + strand, within Dsui_1181at 1235.352 kb on - strand, within Dsui_1181at 1235.409 kb on + strandat 1235.416 kb on - strandat 1235.604 kb on + strandat 1235.604 kb on + strandat 1235.604 kb on + strandat 1235.604 kb on + strandat 1235.604 kb on + strandat 1235.611 kb on + strandat 1235.612 kb on - strandat 1237.078 kb on - strandat 1237.104 kb on + strandat 1237.112 kb on - strandat 1237.116 kb on + strandat 1237.123 kb on - strandat 1237.124 kb on - strandat 1237.124 kb on - strandat 1237.124 kb on - strandat 1237.462 kb on - strandat 1237.493 kb on - strandat 1237.517 kb on + strandat 1237.525 kb on - strandat 1237.541 kb on - strandat 1237.552 kb on - strand, within Dsui_1185at 1237.615 kb on - strand, within Dsui_1185at 1237.615 kb on - strand, within Dsui_1185at 1237.615 kb on - strand, within Dsui_1185at 1237.852 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,234,648 + Dsui_1181 0.37 +1.9
1,234,683 - Dsui_1181 0.39 +1.2
1,234,683 - Dsui_1181 0.39 +1.1
1,234,683 - Dsui_1181 0.39 +0.9
1,234,684 - Dsui_1181 0.39 +0.0
1,234,714 + Dsui_1181 0.41 -0.5
1,234,714 + Dsui_1181 0.41 -0.2
1,234,729 - Dsui_1181 0.43 -0.4
1,234,759 + Dsui_1181 0.45 -0.2
1,234,825 + Dsui_1181 0.49 -1.6
1,234,845 + Dsui_1181 0.51 -0.3
1,234,847 + Dsui_1181 0.51 -0.4
1,234,860 + -0.2
1,234,894 + Dsui_1181 0.54 -1.7
1,234,989 - Dsui_1181 0.61 +0.4
1,235,245 + Dsui_1181 0.79 +0.0
1,235,303 - Dsui_1181 0.84 +1.5
1,235,321 + Dsui_1181 0.85 +1.0
1,235,352 - Dsui_1181 0.87 +0.9
1,235,409 + +0.3
1,235,416 - +0.8
1,235,604 + +0.4
1,235,604 + -0.4
1,235,604 + +2.2
1,235,604 + +0.2
1,235,604 + +0.2
1,235,611 + -0.3
1,235,612 - +1.1
1,237,078 - +1.0
1,237,104 + +1.1
1,237,112 - +0.4
1,237,116 + +0.8
1,237,123 - +0.2
1,237,124 - +1.0
1,237,124 - +1.6
1,237,124 - +0.3
1,237,462 - -2.3
1,237,493 - +0.9
1,237,517 + -0.0
1,237,525 - +0.2
1,237,541 - +0.9
1,237,552 - Dsui_1185 0.12 +0.7
1,237,615 - Dsui_1185 0.29 +2.1
1,237,615 - Dsui_1185 0.29 +0.8
1,237,615 - Dsui_1185 0.29 +0.9
1,237,852 + +1.2

Or see this region's nucleotide sequence