Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1175 and Dsui_1176 are separated by 283 nucleotides Dsui_1176 and Dsui_1177 are separated by 109 nucleotides
Dsui_1175: Dsui_1175 - cytochrome c-type biogenesis protein CcmI, at 1,229,533 to 1,230,396
_1175
Dsui_1176: Dsui_1176 - periplasmic nitrate/nitrite reductase c-type cytochrome, NapC/NirT family, at 1,230,680 to 1,231,270
_1176
Dsui_1177: Dsui_1177 - Ethylbenzene dehydrogenase, at 1,231,380 to 1,232,249
_1177
Position (kb)
1230
1231
1232 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1229.880 kb on + strand, within Dsui_1175 at 1230.121 kb on + strand, within Dsui_1175 at 1230.139 kb on - strand at 1230.194 kb on + strand, within Dsui_1175 at 1230.272 kb on + strand, within Dsui_1175 at 1230.342 kb on - strand at 1230.342 kb on - strand at 1230.466 kb on + strand at 1230.525 kb on - strand at 1230.560 kb on + strand at 1230.568 kb on - strand at 1230.605 kb on - strand at 1230.648 kb on - strand at 1230.721 kb on - strand at 1230.722 kb on - strand at 1230.722 kb on - strand at 1230.754 kb on + strand, within Dsui_1176 at 1230.819 kb on + strand, within Dsui_1176 at 1230.825 kb on + strand, within Dsui_1176 at 1230.825 kb on + strand, within Dsui_1176 at 1230.875 kb on + strand, within Dsui_1176 at 1230.964 kb on - strand, within Dsui_1176 at 1230.995 kb on - strand, within Dsui_1176 at 1231.060 kb on + strand, within Dsui_1176 at 1231.073 kb on - strand, within Dsui_1176 at 1231.142 kb on + strand, within Dsui_1176 at 1231.203 kb on + strand, within Dsui_1176 at 1231.221 kb on + strand at 1231.227 kb on - strand at 1231.238 kb on + strand at 1231.238 kb on + strand at 1231.239 kb on - strand at 1231.246 kb on - strand at 1231.246 kb on - strand at 1231.246 kb on - strand at 1231.246 kb on - strand at 1231.292 kb on + strand at 1231.311 kb on + strand at 1231.380 kb on - strand at 1231.380 kb on - strand at 1231.408 kb on - strand at 1231.428 kb on - strand at 1231.470 kb on - strand, within Dsui_1177 at 1231.516 kb on - strand, within Dsui_1177 at 1231.544 kb on + strand, within Dsui_1177 at 1231.568 kb on + strand, within Dsui_1177 at 1231.569 kb on + strand, within Dsui_1177 at 1231.569 kb on + strand, within Dsui_1177 at 1231.570 kb on - strand, within Dsui_1177 at 1231.588 kb on + strand, within Dsui_1177 at 1231.680 kb on - strand, within Dsui_1177 at 1231.788 kb on - strand, within Dsui_1177 at 1231.858 kb on - strand, within Dsui_1177 at 1231.874 kb on + strand, within Dsui_1177 at 1231.958 kb on - strand, within Dsui_1177 at 1232.060 kb on + strand, within Dsui_1177 at 1232.068 kb on - strand, within Dsui_1177 at 1232.088 kb on - strand at 1232.197 kb on + strand at 1232.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 1,229,880 + Dsui_1175 0.40 -2.0 1,230,121 + Dsui_1175 0.68 -2.5 1,230,139 - -1.9 1,230,194 + Dsui_1175 0.77 -0.2 1,230,272 + Dsui_1175 0.86 -0.8 1,230,342 - -1.9 1,230,342 - +0.2 1,230,466 + +1.1 1,230,525 - +0.6 1,230,560 + +1.0 1,230,568 - -1.4 1,230,605 - -0.6 1,230,648 - +0.2 1,230,721 - +0.6 1,230,722 - +3.1 1,230,722 - +1.1 1,230,754 + Dsui_1176 0.13 +1.4 1,230,819 + Dsui_1176 0.24 +0.7 1,230,825 + Dsui_1176 0.25 +2.0 1,230,825 + Dsui_1176 0.25 +1.4 1,230,875 + Dsui_1176 0.33 +1.1 1,230,964 - Dsui_1176 0.48 -0.4 1,230,995 - Dsui_1176 0.53 +0.1 1,231,060 + Dsui_1176 0.64 +1.1 1,231,073 - Dsui_1176 0.66 +0.5 1,231,142 + Dsui_1176 0.78 +0.7 1,231,203 + Dsui_1176 0.88 +1.2 1,231,221 + +0.9 1,231,227 - -0.3 1,231,238 + +1.9 1,231,238 + +1.1 1,231,239 - +3.0 1,231,246 - +0.2 1,231,246 - +0.1 1,231,246 - +0.6 1,231,246 - +0.4 1,231,292 + +0.6 1,231,311 + +0.8 1,231,380 - +1.1 1,231,380 - +1.2 1,231,408 - +0.6 1,231,428 - +1.3 1,231,470 - Dsui_1177 0.10 +0.6 1,231,516 - Dsui_1177 0.16 -0.2 1,231,544 + Dsui_1177 0.19 +0.9 1,231,568 + Dsui_1177 0.22 +1.5 1,231,569 + Dsui_1177 0.22 +2.1 1,231,569 + Dsui_1177 0.22 +2.4 1,231,570 - Dsui_1177 0.22 +1.6 1,231,588 + Dsui_1177 0.24 +2.2 1,231,680 - Dsui_1177 0.34 +0.8 1,231,788 - Dsui_1177 0.47 +0.8 1,231,858 - Dsui_1177 0.55 -0.2 1,231,874 + Dsui_1177 0.57 +1.7 1,231,958 - Dsui_1177 0.66 +0.8 1,232,060 + Dsui_1177 0.78 -0.5 1,232,068 - Dsui_1177 0.79 -0.2 1,232,088 - -2.3 1,232,197 + +1.6 1,232,224 - +0.1
Or see this region's nucleotide sequence