Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0156 and Dsui_0157 are separated by 10 nucleotides Dsui_0157 and Dsui_0158 are separated by 64 nucleotides Dsui_0158 and Dsui_0160 are separated by 841 nucleotides
Dsui_0156: Dsui_0156 - thiosulfate reductase cytochrome B subunit (membrane anchoring protein), at 161,978 to 162,574
_0156
Dsui_0157: Dsui_0157 - sulfite oxidase-like oxidoreductase, at 162,585 to 163,373
_0157
Dsui_0158: Dsui_0158 - pentapeptide MXKDX repeat protein, at 163,438 to 163,677
_0158
Dsui_0160: Dsui_0160 - hypothetical protein, at 164,519 to 165,292
_0160
Position (kb) 163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 162.475 kb on + strand, within Dsui_0156 at 162.485 kb on - strand, within Dsui_0156 at 162.510 kb on + strand, within Dsui_0156 at 162.518 kb on - strand at 162.528 kb on - strand at 162.528 kb on - strand at 162.534 kb on - strand at 162.543 kb on - strand at 162.593 kb on - strand at 162.612 kb on - strand at 162.748 kb on + strand, within Dsui_0157 at 162.774 kb on - strand, within Dsui_0157 at 162.810 kb on - strand, within Dsui_0157 at 162.827 kb on + strand, within Dsui_0157 at 162.831 kb on - strand, within Dsui_0157 at 162.847 kb on + strand, within Dsui_0157 at 162.847 kb on + strand, within Dsui_0157 at 162.881 kb on - strand, within Dsui_0157 at 162.914 kb on - strand, within Dsui_0157 at 162.934 kb on + strand, within Dsui_0157 at 162.936 kb on - strand, within Dsui_0157 at 162.956 kb on - strand, within Dsui_0157 at 162.995 kb on - strand, within Dsui_0157 at 163.020 kb on + strand, within Dsui_0157 at 163.020 kb on + strand, within Dsui_0157 at 163.022 kb on + strand, within Dsui_0157 at 163.046 kb on - strand, within Dsui_0157 at 163.073 kb on - strand, within Dsui_0157 at 163.081 kb on - strand, within Dsui_0157 at 163.084 kb on + strand, within Dsui_0157 at 163.084 kb on + strand, within Dsui_0157 at 163.084 kb on + strand, within Dsui_0157 at 163.092 kb on - strand, within Dsui_0157 at 163.099 kb on + strand, within Dsui_0157 at 163.146 kb on + strand, within Dsui_0157 at 163.153 kb on - strand, within Dsui_0157 at 163.212 kb on + strand, within Dsui_0157 at 163.274 kb on - strand, within Dsui_0157 at 163.316 kb on + strand at 163.319 kb on - strand at 163.322 kb on - strand at 163.324 kb on - strand at 163.330 kb on - strand at 163.341 kb on + strand at 163.341 kb on + strand at 163.347 kb on + strand at 163.347 kb on + strand at 163.347 kb on + strand at 163.349 kb on - strand at 163.355 kb on - strand at 163.355 kb on - strand at 163.355 kb on - strand at 163.385 kb on + strand at 163.393 kb on - strand at 163.393 kb on - strand at 163.393 kb on - strand at 163.399 kb on + strand at 163.410 kb on + strand at 163.418 kb on + strand at 163.456 kb on + strand at 163.462 kb on - strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.472 kb on + strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.480 kb on - strand, within Dsui_0158 at 163.524 kb on + strand, within Dsui_0158 at 163.532 kb on - strand, within Dsui_0158 at 163.551 kb on + strand, within Dsui_0158 at 163.551 kb on - strand, within Dsui_0158 at 163.560 kb on + strand, within Dsui_0158 at 163.581 kb on + strand, within Dsui_0158 at 163.589 kb on - strand, within Dsui_0158 at 163.592 kb on - strand, within Dsui_0158 at 163.598 kb on - strand, within Dsui_0158 at 163.656 kb on - strand at 163.678 kb on + strand at 163.712 kb on - strand at 163.730 kb on + strand at 163.744 kb on - strand at 163.764 kb on - strand at 163.775 kb on + strand at 163.775 kb on + strand at 163.775 kb on + strand at 163.783 kb on - strand at 163.783 kb on - strand at 163.783 kb on - strand at 163.805 kb on - strand at 163.810 kb on - strand at 163.828 kb on - strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.832 kb on + strand at 163.832 kb on + strand at 163.839 kb on - strand at 163.839 kb on - strand at 163.839 kb on - strand at 163.839 kb on - strand at 163.839 kb on - strand at 163.867 kb on + strand at 163.873 kb on - strand at 163.873 kb on - strand at 163.878 kb on - strand at 163.884 kb on - strand at 163.913 kb on - strand at 163.925 kb on - strand at 163.957 kb on - strand at 163.970 kb on + strand at 163.978 kb on - strand at 163.978 kb on - strand at 163.980 kb on + strand at 164.009 kb on - strand at 164.010 kb on + strand at 164.025 kb on + strand at 164.025 kb on + strand at 164.051 kb on + strand at 164.059 kb on - strand at 164.068 kb on + strand at 164.110 kb on + strand at 164.124 kb on + strand at 164.128 kb on - strand at 164.138 kb on + strand at 164.149 kb on + strand at 164.149 kb on + strand at 164.149 kb on + strand at 164.149 kb on + strand at 164.149 kb on + strand at 164.157 kb on - strand at 164.157 kb on - strand at 164.157 kb on - strand at 164.157 kb on - strand at 164.157 kb on - strand at 164.209 kb on + strand at 164.240 kb on + strand at 164.251 kb on - strand at 164.251 kb on - strand at 164.251 kb on - strand at 164.260 kb on + strand at 164.263 kb on - strand at 164.263 kb on - strand at 164.272 kb on + strand at 164.292 kb on + strand at 164.328 kb on - strand at 164.328 kb on - strand at 164.333 kb on - strand at 164.346 kb on - strand at 164.360 kb on - strand at 164.388 kb on + strand at 164.396 kb on - strand at 164.417 kb on - strand at 164.425 kb on + strand at 164.441 kb on + strand at 164.463 kb on + strand at 164.474 kb on + strand at 164.474 kb on + strand at 164.475 kb on - strand at 164.482 kb on - strand at 164.482 kb on - strand at 164.482 kb on - strand at 164.493 kb on + strand at 164.496 kb on - strand at 164.500 kb on + strand at 164.501 kb on - strand at 164.501 kb on - strand at 164.501 kb on - strand at 164.507 kb on + strand at 164.507 kb on - strand at 164.515 kb on - strand at 164.526 kb on + strand at 164.534 kb on - strand at 164.556 kb on + strand at 164.559 kb on - strand at 164.593 kb on - strand at 164.600 kb on - strand, within Dsui_0160 at 164.604 kb on - strand, within Dsui_0160 at 164.607 kb on - strand, within Dsui_0160 at 164.610 kb on + strand, within Dsui_0160 at 164.619 kb on - strand, within Dsui_0160 at 164.619 kb on - strand, within Dsui_0160 at 164.661 kb on - strand, within Dsui_0160 at 164.661 kb on - strand, within Dsui_0160 at 164.663 kb on + strand, within Dsui_0160 at 164.671 kb on - strand, within Dsui_0160 at 164.671 kb on - strand, within Dsui_0160 at 164.676 kb on - strand, within Dsui_0160
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 162,475 + Dsui_0156 0.83 +0.3 162,485 - Dsui_0156 0.85 -1.7 162,510 + Dsui_0156 0.89 +0.5 162,518 - +0.5 162,528 - -1.1 162,528 - +0.8 162,534 - -0.3 162,543 - +0.4 162,593 - +0.7 162,612 - +1.8 162,748 + Dsui_0157 0.21 -0.5 162,774 - Dsui_0157 0.24 +1.1 162,810 - Dsui_0157 0.29 -0.5 162,827 + Dsui_0157 0.31 -3.2 162,831 - Dsui_0157 0.31 -0.8 162,847 + Dsui_0157 0.33 +0.6 162,847 + Dsui_0157 0.33 +0.6 162,881 - Dsui_0157 0.38 +0.4 162,914 - Dsui_0157 0.42 +0.3 162,934 + Dsui_0157 0.44 -0.1 162,936 - Dsui_0157 0.44 +0.2 162,956 - Dsui_0157 0.47 +0.4 162,995 - Dsui_0157 0.52 +0.5 163,020 + Dsui_0157 0.55 -0.4 163,020 + Dsui_0157 0.55 +0.2 163,022 + Dsui_0157 0.55 +0.6 163,046 - Dsui_0157 0.58 +0.6 163,073 - Dsui_0157 0.62 +0.3 163,081 - Dsui_0157 0.63 +0.1 163,084 + Dsui_0157 0.63 -2.1 163,084 + Dsui_0157 0.63 +0.4 163,084 + Dsui_0157 0.63 +0.0 163,092 - Dsui_0157 0.64 +0.4 163,099 + Dsui_0157 0.65 -0.2 163,146 + Dsui_0157 0.71 -0.3 163,153 - Dsui_0157 0.72 +0.1 163,212 + Dsui_0157 0.79 -0.8 163,274 - Dsui_0157 0.87 -1.2 163,316 + -0.8 163,319 - -0.1 163,322 - -0.3 163,324 - -0.9 163,330 - -2.0 163,341 + +0.4 163,341 + -2.6 163,347 + +0.6 163,347 + -0.6 163,347 + -2.0 163,349 - +0.5 163,355 - -0.7 163,355 - +0.6 163,355 - -0.5 163,385 + -0.3 163,393 - +0.4 163,393 - +0.0 163,393 - -0.2 163,399 + +0.5 163,410 + +0.2 163,418 + -0.3 163,456 + -0.3 163,462 - Dsui_0158 0.10 -0.8 163,466 + Dsui_0158 0.12 -0.1 163,466 + Dsui_0158 0.12 -0.8 163,466 + Dsui_0158 0.12 +0.8 163,466 + Dsui_0158 0.12 -0.4 163,466 + Dsui_0158 0.12 +0.2 163,466 + Dsui_0158 0.12 +0.3 163,472 + Dsui_0158 0.14 +0.8 163,474 - Dsui_0158 0.15 +0.6 163,474 - Dsui_0158 0.15 +0.7 163,474 - Dsui_0158 0.15 +0.1 163,474 - Dsui_0158 0.15 -0.4 163,474 - Dsui_0158 0.15 +1.6 163,474 - Dsui_0158 0.15 -1.3 163,474 - Dsui_0158 0.15 +0.4 163,474 - Dsui_0158 0.15 -0.1 163,474 - Dsui_0158 0.15 +0.7 163,474 - Dsui_0158 0.15 +1.4 163,480 - Dsui_0158 0.17 +0.7 163,524 + Dsui_0158 0.36 +0.6 163,532 - Dsui_0158 0.39 -0.2 163,551 + Dsui_0158 0.47 -0.5 163,551 - Dsui_0158 0.47 -0.3 163,560 + Dsui_0158 0.51 -0.9 163,581 + Dsui_0158 0.60 +0.3 163,589 - Dsui_0158 0.63 +0.3 163,592 - Dsui_0158 0.64 +1.6 163,598 - Dsui_0158 0.67 +0.3 163,656 - -0.5 163,678 + +0.4 163,712 - +1.0 163,730 + +1.0 163,744 - +0.8 163,764 - -0.1 163,775 + -0.3 163,775 + +0.0 163,775 + -1.6 163,783 - +0.2 163,783 - +0.4 163,783 - +0.8 163,805 - -0.1 163,810 - +0.6 163,828 - -2.2 163,831 + -0.7 163,831 + +0.4 163,831 + +0.2 163,831 + -0.8 163,831 + +1.4 163,831 + -1.1 163,831 + +0.3 163,831 + -0.4 163,832 + +0.2 163,832 + -1.5 163,839 - +0.7 163,839 - +0.1 163,839 - +0.6 163,839 - -0.5 163,839 - +0.6 163,867 + +0.4 163,873 - +0.0 163,873 - +0.8 163,878 - +0.2 163,884 - +0.6 163,913 - -1.7 163,925 - +0.5 163,957 - -0.5 163,970 + +0.3 163,978 - +0.5 163,978 - +0.0 163,980 + -0.3 164,009 - -1.1 164,010 + +0.7 164,025 + +0.1 164,025 + -0.4 164,051 + +0.8 164,059 - +0.1 164,068 + +0.5 164,110 + -1.3 164,124 + -1.4 164,128 - -0.4 164,138 + -2.1 164,149 + +0.8 164,149 + -0.8 164,149 + +0.0 164,149 + -0.6 164,149 + +0.8 164,157 - +0.3 164,157 - -0.8 164,157 - -0.0 164,157 - -0.2 164,157 - +0.0 164,209 + +0.4 164,240 + -0.1 164,251 - +0.3 164,251 - +0.0 164,251 - -0.4 164,260 + +0.9 164,263 - +0.4 164,263 - -1.8 164,272 + -2.5 164,292 + -0.0 164,328 - -1.3 164,328 - -0.3 164,333 - -0.3 164,346 - +1.7 164,360 - +0.2 164,388 + +1.1 164,396 - +0.5 164,417 - +1.1 164,425 + -0.1 164,441 + -0.9 164,463 + +0.7 164,474 + -0.6 164,474 + +0.9 164,475 - -0.1 164,482 - +0.4 164,482 - +0.1 164,482 - +0.4 164,493 + +0.3 164,496 - +0.6 164,500 + +1.1 164,501 - +1.0 164,501 - +0.0 164,501 - +0.5 164,507 + -0.0 164,507 - +0.6 164,515 - +0.2 164,526 + +1.7 164,534 - -0.3 164,556 + -0.4 164,559 - -0.6 164,593 - -0.3 164,600 - Dsui_0160 0.10 +0.5 164,604 - Dsui_0160 0.11 +0.8 164,607 - Dsui_0160 0.11 +1.0 164,610 + Dsui_0160 0.12 -0.7 164,619 - Dsui_0160 0.13 -0.3 164,619 - Dsui_0160 0.13 +0.5 164,661 - Dsui_0160 0.18 +0.9 164,661 - Dsui_0160 0.18 +1.4 164,663 + Dsui_0160 0.19 -0.5 164,671 - Dsui_0160 0.20 +0.5 164,671 - Dsui_0160 0.20 +2.1 164,676 - Dsui_0160 0.20 +1.7
Or see this region's nucleotide sequence