Strain Fitness in Dechlorosoma suillum PS around Dsui_0125

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0123 and Dsui_0124 are separated by 9 nucleotidesDsui_0124 and Dsui_0125 are separated by 4 nucleotidesDsui_0125 and Dsui_0126 are separated by 108 nucleotides Dsui_0123: Dsui_0123 - hypothetical protein, at 120,968 to 121,624 _0123 Dsui_0124: Dsui_0124 - lactate dehydrogenase-like oxidoreductase, at 121,634 to 122,602 _0124 Dsui_0125: Dsui_0125 - NAD-dependent aldehyde dehydrogenase, at 122,607 to 123,344 _0125 Dsui_0126: Dsui_0126 - (4Fe-4S) cluster-containing protein, at 123,453 to 124,892 _0126 Position (kb) 122 123 124Strain fitness (log2 ratio) -2 -1 0 1 2 3at 121.683 kb on + strandat 121.683 kb on + strandat 121.691 kb on - strandat 121.710 kb on + strandat 121.736 kb on + strandat 121.737 kb on + strandat 121.783 kb on + strand, within Dsui_0124at 121.783 kb on + strandat 121.791 kb on - strand, within Dsui_0124at 121.842 kb on - strand, within Dsui_0124at 121.935 kb on - strand, within Dsui_0124at 121.935 kb on - strand, within Dsui_0124at 121.997 kb on + strand, within Dsui_0124at 122.005 kb on - strand, within Dsui_0124at 122.043 kb on + strandat 122.043 kb on - strand, within Dsui_0124at 122.065 kb on - strand, within Dsui_0124at 122.105 kb on + strand, within Dsui_0124at 122.126 kb on + strandat 122.139 kb on - strand, within Dsui_0124at 122.155 kb on + strand, within Dsui_0124at 122.155 kb on + strandat 122.156 kb on + strandat 122.217 kb on - strand, within Dsui_0124at 122.252 kb on + strand, within Dsui_0124at 122.281 kb on - strand, within Dsui_0124at 122.314 kb on - strand, within Dsui_0124at 122.315 kb on - strand, within Dsui_0124at 122.341 kb on - strand, within Dsui_0124at 122.359 kb on - strand, within Dsui_0124at 122.361 kb on + strand, within Dsui_0124at 122.449 kb on - strand, within Dsui_0124at 122.519 kb on - strandat 122.526 kb on + strandat 122.534 kb on - strandat 122.605 kb on + strandat 122.655 kb on - strandat 122.675 kb on - strandat 122.872 kb on - strand, within Dsui_0125at 122.896 kb on + strandat 123.218 kb on + strandat 123.241 kb on - strand, within Dsui_0125at 123.272 kb on - strandat 123.282 kb on - strandat 123.287 kb on - strandat 123.315 kb on + strandat 123.317 kb on - strandat 123.331 kb on + strandat 123.360 kb on - strandat 123.395 kb on - strandat 123.427 kb on + strandat 123.446 kb on - strandat 123.451 kb on + strandat 123.459 kb on - strandat 123.493 kb on + strandat 123.655 kb on - strand, within Dsui_0126at 123.682 kb on - strand, within Dsui_0126at 123.697 kb on - strand, within Dsui_0126at 123.770 kb on - strand, within Dsui_0126at 123.827 kb on - strand, within Dsui_0126at 123.828 kb on - strand, within Dsui_0126at 123.839 kb on - strand, within Dsui_0126at 123.869 kb on - strand, within Dsui_0126at 123.899 kb on - strand, within Dsui_0126at 124.007 kb on + strand, within Dsui_0126at 124.007 kb on + strandat 124.035 kb on - strand, within Dsui_0126at 124.035 kb on - strand, within Dsui_0126at 124.092 kb on + strand, within Dsui_0126at 124.111 kb on + strandat 124.127 kb on + strand, within Dsui_0126at 124.220 kb on - strand, within Dsui_0126at 124.276 kb on + strand, within Dsui_0126at 124.286 kb on - strandat 124.322 kb on - strand, within Dsui_0126at 124.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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121,683 + -0.1
121,683 + -1.1
121,691 - +1.1
121,710 + -0.4
121,736 + +1.2
121,737 + -2.5
121,783 + Dsui_0124 0.15 +0.0
121,783 + -2.6
121,791 - Dsui_0124 0.16 +1.0
121,842 - Dsui_0124 0.21 +1.0
121,935 - Dsui_0124 0.31 +0.9
121,935 - Dsui_0124 0.31 -0.6
121,997 + Dsui_0124 0.37 +0.0
122,005 - Dsui_0124 0.38 +0.8
122,043 + +1.6
122,043 - Dsui_0124 0.42 +0.8
122,065 - Dsui_0124 0.44 +1.1
122,105 + Dsui_0124 0.49 +0.6
122,126 + -0.8
122,139 - Dsui_0124 0.52 +1.1
122,155 + Dsui_0124 0.54 -0.1
122,155 + -1.7
122,156 + -2.2
122,217 - Dsui_0124 0.60 +1.0
122,252 + Dsui_0124 0.64 -1.2
122,281 - Dsui_0124 0.67 +1.2
122,314 - Dsui_0124 0.70 +1.1
122,315 - Dsui_0124 0.70 +0.9
122,341 - Dsui_0124 0.73 +1.3
122,359 - Dsui_0124 0.75 +1.0
122,361 + Dsui_0124 0.75 +0.5
122,449 - Dsui_0124 0.84 +0.9
122,519 - +1.2
122,526 + +1.0
122,534 - +2.0
122,605 + +1.4
122,655 - +1.3
122,675 - +1.5
122,872 - Dsui_0125 0.36 +1.0
122,896 + +3.0
123,218 + -1.8
123,241 - Dsui_0125 0.86 +0.7
123,272 - +0.8
123,282 - +1.6
123,287 - +0.4
123,315 + +0.5
123,317 - +1.3
123,331 + -0.5
123,360 - +1.5
123,395 - +1.3
123,427 + -0.6
123,446 - +1.7
123,451 + +0.2
123,459 - +1.6
123,493 + +0.2
123,655 - Dsui_0126 0.14 +0.8
123,682 - Dsui_0126 0.16 +0.6
123,697 - Dsui_0126 0.17 +0.4
123,770 - Dsui_0126 0.22 +1.1
123,827 - Dsui_0126 0.26 +1.1
123,828 - Dsui_0126 0.26 +1.3
123,839 - Dsui_0126 0.27 +1.5
123,869 - Dsui_0126 0.29 +1.1
123,899 - Dsui_0126 0.31 +1.2
124,007 + Dsui_0126 0.38 +0.2
124,007 + +1.4
124,035 - Dsui_0126 0.40 +0.6
124,035 - Dsui_0126 0.40 +1.4
124,092 + Dsui_0126 0.44 +0.4
124,111 + +2.1
124,127 + Dsui_0126 0.47 -0.2
124,220 - Dsui_0126 0.53 +1.7
124,276 + Dsui_0126 0.57 -2.4
124,286 - +2.0
124,322 - Dsui_0126 0.60 +0.5
124,332 + +0.5

Or see this region's nucleotide sequence