Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19330

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19320 and CSW01_19325 are separated by 48 nucleotidesCSW01_19325 and CSW01_19330 are separated by 113 nucleotidesCSW01_19330 and CSW01_19335 are separated by 100 nucleotides CSW01_19320: CSW01_19320 - mannitol-1-phosphate 5-dehydrogenase, at 995,113 to 996,267 _19320 CSW01_19325: CSW01_19325 - MltR family transcriptional regulator, at 996,316 to 996,897 _19325 CSW01_19330: CSW01_19330 - gfo/Idh/MocA family oxidoreductase, at 997,011 to 997,946 _19330 CSW01_19335: CSW01_19335 - MBL fold metallo-hydrolase, at 998,047 to 998,925 _19335 Position (kb) 997 998Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 996.056 kb on + strand, within CSW01_19320at 996.059 kb on + strand, within CSW01_19320at 996.072 kb on - strand, within CSW01_19320at 996.072 kb on - strand, within CSW01_19320at 996.190 kb on - strandat 996.190 kb on - strandat 996.190 kb on - strandat 996.256 kb on + strandat 996.342 kb on + strandat 996.350 kb on - strandat 996.404 kb on + strand, within CSW01_19325at 996.404 kb on + strand, within CSW01_19325at 996.409 kb on + strand, within CSW01_19325at 996.417 kb on - strand, within CSW01_19325at 996.553 kb on - strand, within CSW01_19325at 996.553 kb on - strand, within CSW01_19325at 996.553 kb on - strand, within CSW01_19325at 996.563 kb on + strand, within CSW01_19325at 996.634 kb on - strand, within CSW01_19325at 996.711 kb on + strand, within CSW01_19325at 996.727 kb on - strand, within CSW01_19325at 996.828 kb on + strand, within CSW01_19325at 996.836 kb on - strand, within CSW01_19325at 996.971 kb on + strandat 996.971 kb on + strandat 996.975 kb on - strandat 996.978 kb on + strandat 996.979 kb on - strandat 996.985 kb on - strandat 997.129 kb on + strand, within CSW01_19330at 997.131 kb on + strand, within CSW01_19330at 997.153 kb on + strand, within CSW01_19330at 997.191 kb on + strand, within CSW01_19330at 997.195 kb on - strand, within CSW01_19330at 997.203 kb on + strand, within CSW01_19330at 997.203 kb on + strand, within CSW01_19330at 997.211 kb on - strand, within CSW01_19330at 997.224 kb on + strand, within CSW01_19330at 997.232 kb on - strand, within CSW01_19330at 997.232 kb on - strand, within CSW01_19330at 997.374 kb on + strand, within CSW01_19330at 997.383 kb on - strand, within CSW01_19330at 997.416 kb on + strand, within CSW01_19330at 997.434 kb on - strand, within CSW01_19330at 997.480 kb on - strand, within CSW01_19330at 997.520 kb on + strand, within CSW01_19330at 997.525 kb on + strand, within CSW01_19330at 997.533 kb on - strand, within CSW01_19330at 997.558 kb on + strand, within CSW01_19330at 997.582 kb on + strand, within CSW01_19330at 997.590 kb on - strand, within CSW01_19330at 997.669 kb on + strand, within CSW01_19330at 997.677 kb on - strand, within CSW01_19330at 997.677 kb on - strand, within CSW01_19330at 997.677 kb on - strand, within CSW01_19330at 997.818 kb on + strand, within CSW01_19330at 997.835 kb on + strand, within CSW01_19330at 997.941 kb on + strandat 997.941 kb on + strandat 997.947 kb on + strandat 997.948 kb on - strandat 997.949 kb on - strandat 997.970 kb on - strandat 997.975 kb on - strandat 997.984 kb on - strandat 997.986 kb on + strandat 997.986 kb on + strandat 997.993 kb on + strandat 997.993 kb on + strandat 997.994 kb on - strandat 998.076 kb on - strandat 998.081 kb on - strandat 998.093 kb on - strandat 998.093 kb on - strandat 998.111 kb on + strandat 998.142 kb on + strand, within CSW01_19335at 998.159 kb on + strand, within CSW01_19335at 998.164 kb on + strand, within CSW01_19335at 998.164 kb on + strand, within CSW01_19335at 998.172 kb on - strand, within CSW01_19335at 998.212 kb on + strand, within CSW01_19335at 998.247 kb on + strand, within CSW01_19335at 998.247 kb on + strand, within CSW01_19335at 998.287 kb on + strand, within CSW01_19335at 998.301 kb on - strand, within CSW01_19335at 998.339 kb on + strand, within CSW01_19335at 998.347 kb on - strand, within CSW01_19335at 998.374 kb on + strand, within CSW01_19335at 998.421 kb on + strand, within CSW01_19335at 998.421 kb on + strand, within CSW01_19335at 998.528 kb on - strand, within CSW01_19335at 998.540 kb on + strand, within CSW01_19335at 998.566 kb on + strand, within CSW01_19335at 998.566 kb on - strand, within CSW01_19335at 998.587 kb on + strand, within CSW01_19335at 998.595 kb on - strand, within CSW01_19335at 998.617 kb on + strand, within CSW01_19335at 998.662 kb on + strand, within CSW01_19335at 998.667 kb on + strand, within CSW01_19335at 998.670 kb on - strand, within CSW01_19335at 998.670 kb on - strand, within CSW01_19335at 998.712 kb on + strand, within CSW01_19335at 998.712 kb on + strand, within CSW01_19335at 998.720 kb on - strand, within CSW01_19335at 998.720 kb on - strand, within CSW01_19335at 998.728 kb on - strand, within CSW01_19335at 998.778 kb on + strand, within CSW01_19335at 998.778 kb on + strand, within CSW01_19335at 998.786 kb on - strand, within CSW01_19335at 998.786 kb on - strand, within CSW01_19335at 998.813 kb on + strand, within CSW01_19335at 998.814 kb on + strand, within CSW01_19335at 998.822 kb on - strand, within CSW01_19335at 998.866 kb on - strandat 998.876 kb on - strandat 998.945 kb on + strandat 998.945 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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996,056 + CSW01_19320 0.82 -3.3
996,059 + CSW01_19320 0.82 -2.2
996,072 - CSW01_19320 0.83 -2.1
996,072 - CSW01_19320 0.83 +1.6
996,190 - +0.1
996,190 - +1.9
996,190 - -2.0
996,256 + -0.1
996,342 + +1.0
996,350 - -0.3
996,404 + CSW01_19325 0.15 -1.9
996,404 + CSW01_19325 0.15 +2.1
996,409 + CSW01_19325 0.16 -1.7
996,417 - CSW01_19325 0.17 +0.0
996,553 - CSW01_19325 0.41 +0.2
996,553 - CSW01_19325 0.41 +0.2
996,553 - CSW01_19325 0.41 +1.3
996,563 + CSW01_19325 0.42 -0.1
996,634 - CSW01_19325 0.55 +2.7
996,711 + CSW01_19325 0.68 +2.8
996,727 - CSW01_19325 0.71 +0.8
996,828 + CSW01_19325 0.88 -0.4
996,836 - CSW01_19325 0.89 -1.8
996,971 + -0.3
996,971 + +1.1
996,975 - -0.3
996,978 + -0.2
996,979 - +0.2
996,985 - +0.5
997,129 + CSW01_19330 0.13 +0.7
997,131 + CSW01_19330 0.13 -0.6
997,153 + CSW01_19330 0.15 -3.3
997,191 + CSW01_19330 0.19 -0.0
997,195 - CSW01_19330 0.20 +0.6
997,203 + CSW01_19330 0.21 -0.4
997,203 + CSW01_19330 0.21 -2.4
997,211 - CSW01_19330 0.21 -2.4
997,224 + CSW01_19330 0.23 -2.3
997,232 - CSW01_19330 0.24 +1.1
997,232 - CSW01_19330 0.24 -1.4
997,374 + CSW01_19330 0.39 +1.5
997,383 - CSW01_19330 0.40 -0.1
997,416 + CSW01_19330 0.43 +0.6
997,434 - CSW01_19330 0.45 -0.6
997,480 - CSW01_19330 0.50 +0.8
997,520 + CSW01_19330 0.54 -0.5
997,525 + CSW01_19330 0.55 +2.0
997,533 - CSW01_19330 0.56 +0.9
997,558 + CSW01_19330 0.58 -1.0
997,582 + CSW01_19330 0.61 -1.7
997,590 - CSW01_19330 0.62 -2.2
997,669 + CSW01_19330 0.70 -0.2
997,677 - CSW01_19330 0.71 -0.0
997,677 - CSW01_19330 0.71 -2.3
997,677 - CSW01_19330 0.71 -1.5
997,818 + CSW01_19330 0.86 +1.0
997,835 + CSW01_19330 0.88 -0.6
997,941 + -2.5
997,941 + +0.3
997,947 + +0.0
997,948 - +0.3
997,949 - +1.0
997,970 - -0.2
997,975 - +0.7
997,984 - +2.3
997,986 + -0.0
997,986 + +1.5
997,993 + +2.2
997,993 + -2.3
997,994 - -0.3
998,076 - -1.3
998,081 - +0.3
998,093 - +1.5
998,093 - +1.1
998,111 + -3.4
998,142 + CSW01_19335 0.11 +0.7
998,159 + CSW01_19335 0.13 +0.5
998,164 + CSW01_19335 0.13 +0.8
998,164 + CSW01_19335 0.13 -0.3
998,172 - CSW01_19335 0.14 -1.3
998,212 + CSW01_19335 0.19 -0.3
998,247 + CSW01_19335 0.23 -1.1
998,247 + CSW01_19335 0.23 -0.8
998,287 + CSW01_19335 0.27 -0.1
998,301 - CSW01_19335 0.29 +0.4
998,339 + CSW01_19335 0.33 +0.5
998,347 - CSW01_19335 0.34 +1.0
998,374 + CSW01_19335 0.37 -0.1
998,421 + CSW01_19335 0.43 +1.7
998,421 + CSW01_19335 0.43 -1.0
998,528 - CSW01_19335 0.55 -0.1
998,540 + CSW01_19335 0.56 -2.7
998,566 + CSW01_19335 0.59 +0.0
998,566 - CSW01_19335 0.59 +0.6
998,587 + CSW01_19335 0.61 -2.5
998,595 - CSW01_19335 0.62 -0.3
998,617 + CSW01_19335 0.65 +0.5
998,662 + CSW01_19335 0.70 +1.8
998,667 + CSW01_19335 0.71 +0.7
998,670 - CSW01_19335 0.71 -0.0
998,670 - CSW01_19335 0.71 +1.6
998,712 + CSW01_19335 0.76 +1.2
998,712 + CSW01_19335 0.76 -0.4
998,720 - CSW01_19335 0.77 -1.4
998,720 - CSW01_19335 0.77 +1.0
998,728 - CSW01_19335 0.77 -0.6
998,778 + CSW01_19335 0.83 -2.6
998,778 + CSW01_19335 0.83 -3.2
998,786 - CSW01_19335 0.84 -0.5
998,786 - CSW01_19335 0.84 -2.8
998,813 + CSW01_19335 0.87 +1.2
998,814 + CSW01_19335 0.87 -0.3
998,822 - CSW01_19335 0.88 +1.4
998,866 - -3.0
998,876 - -1.7
998,945 + +0.8
998,945 + +0.3

Or see this region's nucleotide sequence