Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19225

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19220 and CSW01_19225 are separated by 152 nucleotidesCSW01_19225 and CSW01_19230 are separated by 204 nucleotides CSW01_19220: CSW01_19220 - sel1 repeat family protein, at 971,546 to 972,703 _19220 CSW01_19225: CSW01_19225 - transcriptional regulator, at 972,856 to 973,692 _19225 CSW01_19230: CSW01_19230 - maltoporin, at 973,897 to 975,147 _19230 Position (kb) 972 973 974Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 971.879 kb on - strand, within CSW01_19220at 971.924 kb on + strand, within CSW01_19220at 971.963 kb on + strand, within CSW01_19220at 971.970 kb on + strand, within CSW01_19220at 971.971 kb on - strand, within CSW01_19220at 971.978 kb on - strand, within CSW01_19220at 972.045 kb on - strand, within CSW01_19220at 972.056 kb on + strand, within CSW01_19220at 972.085 kb on - strand, within CSW01_19220at 972.087 kb on - strand, within CSW01_19220at 972.089 kb on + strand, within CSW01_19220at 972.089 kb on + strand, within CSW01_19220at 972.089 kb on + strand, within CSW01_19220at 972.097 kb on - strand, within CSW01_19220at 972.097 kb on - strand, within CSW01_19220at 972.223 kb on + strand, within CSW01_19220at 972.223 kb on + strand, within CSW01_19220at 972.231 kb on - strand, within CSW01_19220at 972.255 kb on - strand, within CSW01_19220at 972.255 kb on - strand, within CSW01_19220at 972.305 kb on + strand, within CSW01_19220at 972.313 kb on - strand, within CSW01_19220at 972.313 kb on - strand, within CSW01_19220at 972.319 kb on + strand, within CSW01_19220at 972.454 kb on + strand, within CSW01_19220at 972.470 kb on - strand, within CSW01_19220at 972.560 kb on + strand, within CSW01_19220at 972.568 kb on - strand, within CSW01_19220at 972.599 kb on - strandat 972.655 kb on + strandat 972.669 kb on - strandat 972.725 kb on + strandat 972.725 kb on + strandat 972.727 kb on - strandat 972.733 kb on - strandat 972.733 kb on - strandat 972.733 kb on - strandat 972.748 kb on - strandat 972.748 kb on - strandat 972.748 kb on - strandat 972.896 kb on - strandat 972.899 kb on + strandat 972.907 kb on - strandat 972.958 kb on + strand, within CSW01_19225at 972.958 kb on + strand, within CSW01_19225at 972.966 kb on - strand, within CSW01_19225at 973.217 kb on + strand, within CSW01_19225at 973.238 kb on + strand, within CSW01_19225at 973.335 kb on + strand, within CSW01_19225at 973.335 kb on + strand, within CSW01_19225at 973.350 kb on + strand, within CSW01_19225at 973.350 kb on + strand, within CSW01_19225at 973.358 kb on - strand, within CSW01_19225at 973.358 kb on - strand, within CSW01_19225at 973.374 kb on - strand, within CSW01_19225at 973.422 kb on + strand, within CSW01_19225at 973.444 kb on + strand, within CSW01_19225at 973.525 kb on + strand, within CSW01_19225at 973.602 kb on - strand, within CSW01_19225at 973.604 kb on + strand, within CSW01_19225at 973.604 kb on + strand, within CSW01_19225at 973.604 kb on + strand, within CSW01_19225at 973.604 kb on + strand, within CSW01_19225at 973.604 kb on + strand, within CSW01_19225at 973.604 kb on + strand, within CSW01_19225at 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.612 kb on - strandat 973.631 kb on + strandat 973.631 kb on + strandat 973.639 kb on - strandat 973.639 kb on - strandat 973.679 kb on + strandat 973.687 kb on - strandat 973.727 kb on + strandat 973.727 kb on + strandat 973.877 kb on - strandat 973.890 kb on + strandat 973.956 kb on - strandat 973.999 kb on + strandat 974.001 kb on + strandat 974.001 kb on + strandat 974.001 kb on + strandat 974.001 kb on + strandat 974.001 kb on + strandat 974.001 kb on + strandat 974.001 kb on + strandat 974.001 kb on + strandat 974.001 kb on + strandat 974.001 kb on + strandat 974.001 kb on + strandat 974.009 kb on - strandat 974.009 kb on - strandat 974.009 kb on - strandat 974.009 kb on - strandat 974.009 kb on - strandat 974.009 kb on - strandat 974.009 kb on - strandat 974.009 kb on - strandat 974.023 kb on + strand, within CSW01_19230at 974.033 kb on + strand, within CSW01_19230at 974.033 kb on + strand, within CSW01_19230at 974.033 kb on + strand, within CSW01_19230at 974.033 kb on + strand, within CSW01_19230at 974.033 kb on + strand, within CSW01_19230at 974.033 kb on + strand, within CSW01_19230at 974.033 kb on + strand, within CSW01_19230at 974.041 kb on - strand, within CSW01_19230at 974.056 kb on - strand, within CSW01_19230at 974.119 kb on - strand, within CSW01_19230at 974.124 kb on + strand, within CSW01_19230at 974.124 kb on + strand, within CSW01_19230at 974.168 kb on - strand, within CSW01_19230at 974.200 kb on + strand, within CSW01_19230at 974.208 kb on - strand, within CSW01_19230at 974.237 kb on + strand, within CSW01_19230at 974.257 kb on + strand, within CSW01_19230at 974.273 kb on - strand, within CSW01_19230at 974.273 kb on - strand, within CSW01_19230at 974.284 kb on - strand, within CSW01_19230at 974.378 kb on - strand, within CSW01_19230at 974.417 kb on + strand, within CSW01_19230at 974.425 kb on - strand, within CSW01_19230at 974.469 kb on + strand, within CSW01_19230at 974.501 kb on - strand, within CSW01_19230at 974.545 kb on + strand, within CSW01_19230at 974.545 kb on + strand, within CSW01_19230at 974.552 kb on + strand, within CSW01_19230at 974.553 kb on - strand, within CSW01_19230at 974.562 kb on + strand, within CSW01_19230at 974.570 kb on - strand, within CSW01_19230at 974.580 kb on + strand, within CSW01_19230at 974.594 kb on - strand, within CSW01_19230at 974.663 kb on - strand, within CSW01_19230at 974.675 kb on - strand, within CSW01_19230at 974.689 kb on + strand, within CSW01_19230

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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971,879 - CSW01_19220 0.29 -0.7
971,924 + CSW01_19220 0.33 -2.3
971,963 + CSW01_19220 0.36 -2.3
971,970 + CSW01_19220 0.37 -1.1
971,971 - CSW01_19220 0.37 -0.0
971,978 - CSW01_19220 0.37 -1.3
972,045 - CSW01_19220 0.43 -1.6
972,056 + CSW01_19220 0.44 -1.2
972,085 - CSW01_19220 0.47 +0.8
972,087 - CSW01_19220 0.47 +0.6
972,089 + CSW01_19220 0.47 -1.4
972,089 + CSW01_19220 0.47 -1.3
972,089 + CSW01_19220 0.47 +1.1
972,097 - CSW01_19220 0.48 +0.3
972,097 - CSW01_19220 0.48 +0.8
972,223 + CSW01_19220 0.58 +0.2
972,223 + CSW01_19220 0.58 +0.7
972,231 - CSW01_19220 0.59 -1.1
972,255 - CSW01_19220 0.61 +0.4
972,255 - CSW01_19220 0.61 -1.9
972,305 + CSW01_19220 0.66 +0.6
972,313 - CSW01_19220 0.66 -2.9
972,313 - CSW01_19220 0.66 +0.6
972,319 + CSW01_19220 0.67 +0.7
972,454 + CSW01_19220 0.78 +0.0
972,470 - CSW01_19220 0.80 +0.7
972,560 + CSW01_19220 0.88 +1.3
972,568 - CSW01_19220 0.88 -0.1
972,599 - -1.6
972,655 + +1.3
972,669 - +1.0
972,725 + -2.1
972,725 + -0.1
972,727 - -1.3
972,733 - +1.7
972,733 - -0.4
972,733 - +1.5
972,748 - -1.4
972,748 - -0.4
972,748 - +0.3
972,896 - +0.3
972,899 + -1.8
972,907 - +1.4
972,958 + CSW01_19225 0.12 +0.8
972,958 + CSW01_19225 0.12 -0.2
972,966 - CSW01_19225 0.13 +2.4
973,217 + CSW01_19225 0.43 +1.0
973,238 + CSW01_19225 0.46 -0.1
973,335 + CSW01_19225 0.57 -1.7
973,335 + CSW01_19225 0.57 +1.6
973,350 + CSW01_19225 0.59 +2.2
973,350 + CSW01_19225 0.59 -0.5
973,358 - CSW01_19225 0.60 +0.3
973,358 - CSW01_19225 0.60 +0.9
973,374 - CSW01_19225 0.62 +0.6
973,422 + CSW01_19225 0.68 +0.7
973,444 + CSW01_19225 0.70 +1.8
973,525 + CSW01_19225 0.80 +0.5
973,602 - CSW01_19225 0.89 -0.1
973,604 + CSW01_19225 0.89 +0.5
973,604 + CSW01_19225 0.89 -2.6
973,604 + CSW01_19225 0.89 +0.1
973,604 + CSW01_19225 0.89 -0.5
973,604 + CSW01_19225 0.89 -0.2
973,604 + CSW01_19225 0.89 -1.1
973,612 - -1.7
973,612 - -2.3
973,612 - -1.4
973,612 - -4.1
973,612 - +0.2
973,612 - -0.0
973,612 - +0.4
973,612 - -0.5
973,612 - +0.8
973,612 - +0.9
973,631 + +0.3
973,631 + +0.4
973,639 - +0.8
973,639 - -0.1
973,679 + +0.8
973,687 - -0.7
973,727 + +1.0
973,727 + +0.3
973,877 - -0.6
973,890 + -0.1
973,956 - +0.8
973,999 + -0.3
974,001 + +1.1
974,001 + +0.1
974,001 + -1.7
974,001 + +1.3
974,001 + -2.6
974,001 + +1.8
974,001 + -0.5
974,001 + +0.8
974,001 + -3.6
974,001 + -0.3
974,001 + +1.1
974,009 - +0.6
974,009 - +2.0
974,009 - +1.3
974,009 - +0.3
974,009 - +1.8
974,009 - +1.1
974,009 - +1.1
974,009 - -1.2
974,023 + CSW01_19230 0.10 +0.9
974,033 + CSW01_19230 0.11 +0.6
974,033 + CSW01_19230 0.11 -1.3
974,033 + CSW01_19230 0.11 +0.4
974,033 + CSW01_19230 0.11 -2.8
974,033 + CSW01_19230 0.11 +0.9
974,033 + CSW01_19230 0.11 +0.9
974,033 + CSW01_19230 0.11 +1.4
974,041 - CSW01_19230 0.12 +0.3
974,056 - CSW01_19230 0.13 +0.3
974,119 - CSW01_19230 0.18 +0.6
974,124 + CSW01_19230 0.18 +0.7
974,124 + CSW01_19230 0.18 +1.0
974,168 - CSW01_19230 0.22 +0.2
974,200 + CSW01_19230 0.24 -0.1
974,208 - CSW01_19230 0.25 +0.9
974,237 + CSW01_19230 0.27 -1.4
974,257 + CSW01_19230 0.29 -1.6
974,273 - CSW01_19230 0.30 -1.4
974,273 - CSW01_19230 0.30 +0.1
974,284 - CSW01_19230 0.31 +1.6
974,378 - CSW01_19230 0.38 -0.3
974,417 + CSW01_19230 0.42 -2.7
974,425 - CSW01_19230 0.42 -2.1
974,469 + CSW01_19230 0.46 +0.5
974,501 - CSW01_19230 0.48 +0.3
974,545 + CSW01_19230 0.52 -0.4
974,545 + CSW01_19230 0.52 -2.4
974,552 + CSW01_19230 0.52 -0.2
974,553 - CSW01_19230 0.52 +0.5
974,562 + CSW01_19230 0.53 +2.2
974,570 - CSW01_19230 0.54 +0.8
974,580 + CSW01_19230 0.55 +0.9
974,594 - CSW01_19230 0.56 -3.1
974,663 - CSW01_19230 0.61 +1.5
974,675 - CSW01_19230 0.62 +0.1
974,689 + CSW01_19230 0.63 -3.2

Or see this region's nucleotide sequence