Experiment: ICP3_phage_41.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19165 and CSW01_19170 are separated by 391 nucleotides CSW01_19170 and CSW01_19175 are separated by 65 nucleotides CSW01_19175 and CSW01_19180 are separated by 10 nucleotides CSW01_19180 and CSW01_19185 are separated by 0 nucleotides
CSW01_19165: CSW01_19165 - hypothetical protein, at 960,763 to 961,494
_19165
CSW01_19170: CSW01_19170 - Na+/H+ antiporter NhaD, at 961,886 to 963,319
_19170
CSW01_19175: CSW01_19175 - hypothetical protein, at 963,385 to 963,786
_19175
CSW01_19180: CSW01_19180 - cysteine methyltransferase, at 963,797 to 964,270
_19180
CSW01_19185: CSW01_19185 - 3-methyladenine DNA glycosylase, at 964,271 to 965,629
_19185
Position (kb)
961
962
963
964 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 960.893 kb on - strand, within CSW01_19165 at 960.934 kb on - strand, within CSW01_19165 at 960.991 kb on + strand, within CSW01_19165 at 960.992 kb on + strand, within CSW01_19165 at 961.036 kb on - strand, within CSW01_19165 at 961.051 kb on - strand, within CSW01_19165 at 961.082 kb on - strand, within CSW01_19165 at 961.141 kb on + strand, within CSW01_19165 at 961.141 kb on + strand, within CSW01_19165 at 961.141 kb on + strand, within CSW01_19165 at 961.141 kb on + strand, within CSW01_19165 at 961.144 kb on - strand, within CSW01_19165 at 961.151 kb on - strand, within CSW01_19165 at 961.159 kb on - strand, within CSW01_19165 at 961.201 kb on + strand, within CSW01_19165 at 961.209 kb on - strand, within CSW01_19165 at 961.230 kb on + strand, within CSW01_19165 at 961.230 kb on + strand, within CSW01_19165 at 961.238 kb on - strand, within CSW01_19165 at 961.240 kb on - strand, within CSW01_19165 at 961.276 kb on + strand, within CSW01_19165 at 961.277 kb on - strand, within CSW01_19165 at 961.390 kb on - strand, within CSW01_19165 at 961.435 kb on + strand at 961.443 kb on - strand at 961.533 kb on - strand at 961.671 kb on + strand at 961.725 kb on + strand at 961.797 kb on + strand at 961.797 kb on + strand at 961.832 kb on - strand at 961.914 kb on - strand at 961.930 kb on + strand at 961.992 kb on + strand at 962.018 kb on + strand at 962.155 kb on - strand, within CSW01_19170 at 962.155 kb on - strand, within CSW01_19170 at 962.155 kb on - strand, within CSW01_19170 at 962.155 kb on - strand, within CSW01_19170 at 962.213 kb on + strand, within CSW01_19170 at 962.213 kb on + strand, within CSW01_19170 at 962.221 kb on - strand, within CSW01_19170 at 962.221 kb on - strand, within CSW01_19170 at 962.255 kb on + strand, within CSW01_19170 at 962.404 kb on + strand, within CSW01_19170 at 962.460 kb on - strand, within CSW01_19170 at 962.464 kb on + strand, within CSW01_19170 at 962.480 kb on - strand, within CSW01_19170 at 962.490 kb on + strand, within CSW01_19170 at 962.490 kb on + strand, within CSW01_19170 at 962.490 kb on + strand, within CSW01_19170 at 962.490 kb on + strand, within CSW01_19170 at 962.490 kb on + strand, within CSW01_19170 at 962.490 kb on + strand, within CSW01_19170 at 962.523 kb on + strand, within CSW01_19170 at 962.649 kb on + strand, within CSW01_19170 at 962.865 kb on + strand, within CSW01_19170 at 962.873 kb on - strand, within CSW01_19170 at 962.877 kb on + strand, within CSW01_19170 at 962.939 kb on + strand, within CSW01_19170 at 962.939 kb on + strand, within CSW01_19170 at 962.947 kb on - strand, within CSW01_19170 at 962.957 kb on + strand, within CSW01_19170 at 962.965 kb on - strand, within CSW01_19170 at 962.965 kb on - strand, within CSW01_19170 at 963.006 kb on - strand, within CSW01_19170 at 963.131 kb on - strand, within CSW01_19170 at 963.185 kb on - strand at 963.201 kb on - strand at 963.224 kb on + strand at 963.271 kb on + strand at 963.279 kb on - strand at 963.386 kb on + strand at 963.386 kb on + strand at 963.451 kb on - strand, within CSW01_19175 at 963.483 kb on - strand, within CSW01_19175 at 963.600 kb on - strand, within CSW01_19175 at 963.650 kb on - strand, within CSW01_19175 at 963.650 kb on - strand, within CSW01_19175 at 963.652 kb on - strand, within CSW01_19175 at 963.652 kb on - strand, within CSW01_19175 at 963.725 kb on - strand, within CSW01_19175 at 963.765 kb on + strand at 963.773 kb on - strand at 963.828 kb on + strand at 963.828 kb on + strand at 963.835 kb on + strand at 963.948 kb on + strand, within CSW01_19180 at 963.948 kb on + strand, within CSW01_19180 at 963.948 kb on + strand, within CSW01_19180 at 963.948 kb on + strand, within CSW01_19180 at 963.956 kb on - strand, within CSW01_19180 at 963.956 kb on - strand, within CSW01_19180 at 964.045 kb on - strand, within CSW01_19180 at 964.078 kb on - strand, within CSW01_19180 at 964.082 kb on + strand, within CSW01_19180 at 964.129 kb on + strand, within CSW01_19180 at 964.129 kb on + strand, within CSW01_19180 at 964.129 kb on + strand, within CSW01_19180 at 964.137 kb on - strand, within CSW01_19180 at 964.175 kb on - strand, within CSW01_19180 at 964.199 kb on + strand, within CSW01_19180 at 964.217 kb on + strand, within CSW01_19180 at 964.236 kb on - strand at 964.245 kb on + strand at 964.246 kb on - strand at 964.251 kb on - strand at 964.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1 remove 960,893 - CSW01_19165 0.18 -0.3 960,934 - CSW01_19165 0.23 +0.6 960,991 + CSW01_19165 0.31 +0.1 960,992 + CSW01_19165 0.31 -0.1 961,036 - CSW01_19165 0.37 -1.4 961,051 - CSW01_19165 0.39 -2.6 961,082 - CSW01_19165 0.44 +1.1 961,141 + CSW01_19165 0.52 -0.9 961,141 + CSW01_19165 0.52 -0.1 961,141 + CSW01_19165 0.52 +0.4 961,141 + CSW01_19165 0.52 -1.1 961,144 - CSW01_19165 0.52 +0.3 961,151 - CSW01_19165 0.53 +0.6 961,159 - CSW01_19165 0.54 -0.8 961,201 + CSW01_19165 0.60 +0.2 961,209 - CSW01_19165 0.61 -0.7 961,230 + CSW01_19165 0.64 -0.4 961,230 + CSW01_19165 0.64 -0.2 961,238 - CSW01_19165 0.65 +0.1 961,240 - CSW01_19165 0.65 -0.3 961,276 + CSW01_19165 0.70 -0.6 961,277 - CSW01_19165 0.70 -0.1 961,390 - CSW01_19165 0.86 -0.4 961,435 + -1.0 961,443 - +0.6 961,533 - -0.8 961,671 + +0.5 961,725 + +1.2 961,797 + -0.1 961,797 + +0.1 961,832 - +0.4 961,914 - -0.6 961,930 + +0.2 961,992 + +2.0 962,018 + +1.3 962,155 - CSW01_19170 0.19 +0.2 962,155 - CSW01_19170 0.19 -0.3 962,155 - CSW01_19170 0.19 +1.0 962,155 - CSW01_19170 0.19 -2.0 962,213 + CSW01_19170 0.23 +1.1 962,213 + CSW01_19170 0.23 +0.2 962,221 - CSW01_19170 0.23 -1.9 962,221 - CSW01_19170 0.23 -0.3 962,255 + CSW01_19170 0.26 -0.5 962,404 + CSW01_19170 0.36 +0.7 962,460 - CSW01_19170 0.40 -1.0 962,464 + CSW01_19170 0.40 +1.5 962,480 - CSW01_19170 0.41 -0.8 962,490 + CSW01_19170 0.42 +1.5 962,490 + CSW01_19170 0.42 -0.8 962,490 + CSW01_19170 0.42 +0.4 962,490 + CSW01_19170 0.42 +1.2 962,490 + CSW01_19170 0.42 -1.3 962,490 + CSW01_19170 0.42 -2.2 962,523 + CSW01_19170 0.44 +0.2 962,649 + CSW01_19170 0.53 +0.7 962,865 + CSW01_19170 0.68 +0.4 962,873 - CSW01_19170 0.69 -0.4 962,877 + CSW01_19170 0.69 +1.4 962,939 + CSW01_19170 0.73 -1.4 962,939 + CSW01_19170 0.73 -0.1 962,947 - CSW01_19170 0.74 +1.8 962,957 + CSW01_19170 0.75 +2.5 962,965 - CSW01_19170 0.75 -1.0 962,965 - CSW01_19170 0.75 +2.5 963,006 - CSW01_19170 0.78 +0.6 963,131 - CSW01_19170 0.87 +2.2 963,185 - -2.3 963,201 - -3.4 963,224 + +0.0 963,271 + +0.3 963,279 - -0.7 963,386 + +0.3 963,386 + +0.1 963,451 - CSW01_19175 0.16 -0.5 963,483 - CSW01_19175 0.24 -1.7 963,600 - CSW01_19175 0.53 -1.9 963,650 - CSW01_19175 0.66 +0.5 963,650 - CSW01_19175 0.66 +0.3 963,652 - CSW01_19175 0.66 +0.9 963,652 - CSW01_19175 0.66 +0.3 963,725 - CSW01_19175 0.85 -0.5 963,765 + -0.2 963,773 - +1.9 963,828 + +2.0 963,828 + +0.1 963,835 + +0.1 963,948 + CSW01_19180 0.32 +1.2 963,948 + CSW01_19180 0.32 -0.5 963,948 + CSW01_19180 0.32 -1.1 963,948 + CSW01_19180 0.32 -3.8 963,956 - CSW01_19180 0.34 +1.3 963,956 - CSW01_19180 0.34 -0.5 964,045 - CSW01_19180 0.52 -0.1 964,078 - CSW01_19180 0.59 -0.5 964,082 + CSW01_19180 0.60 -2.4 964,129 + CSW01_19180 0.70 +0.1 964,129 + CSW01_19180 0.70 -0.8 964,129 + CSW01_19180 0.70 +0.9 964,137 - CSW01_19180 0.72 -1.1 964,175 - CSW01_19180 0.80 +0.2 964,199 + CSW01_19180 0.85 +0.3 964,217 + CSW01_19180 0.89 -3.9 964,236 - +0.5 964,245 + -1.9 964,246 - -0.3 964,251 - +0.9 964,312 - -0.8
Or see this region's nucleotide sequence