Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18945

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18940 and CSW01_18945 are separated by 100 nucleotidesCSW01_18945 and CSW01_18950 are separated by 151 nucleotides CSW01_18940: CSW01_18940 - EamA family transporter, at 910,512 to 911,435 _18940 CSW01_18945: CSW01_18945 - LysR family transcriptional regulator, at 911,536 to 912,441 _18945 CSW01_18950: CSW01_18950 - GGDEF domain-containing protein, at 912,593 to 913,783 _18950 Position (kb) 911 912 913Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 910.543 kb on + strandat 910.551 kb on - strandat 910.583 kb on - strandat 910.651 kb on + strand, within CSW01_18940at 910.659 kb on - strand, within CSW01_18940at 910.659 kb on - strand, within CSW01_18940at 910.659 kb on - strand, within CSW01_18940at 910.756 kb on + strand, within CSW01_18940at 910.759 kb on - strand, within CSW01_18940at 910.808 kb on + strand, within CSW01_18940at 910.816 kb on - strand, within CSW01_18940at 910.816 kb on - strand, within CSW01_18940at 910.920 kb on + strand, within CSW01_18940at 910.925 kb on + strand, within CSW01_18940at 910.928 kb on - strand, within CSW01_18940at 910.962 kb on + strand, within CSW01_18940at 910.970 kb on - strand, within CSW01_18940at 910.974 kb on + strand, within CSW01_18940at 910.974 kb on + strand, within CSW01_18940at 910.975 kb on - strand, within CSW01_18940at 911.061 kb on + strand, within CSW01_18940at 911.116 kb on + strand, within CSW01_18940at 911.116 kb on + strand, within CSW01_18940at 911.132 kb on - strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.137 kb on - strand, within CSW01_18940at 911.142 kb on - strand, within CSW01_18940at 911.142 kb on - strand, within CSW01_18940at 911.147 kb on - strand, within CSW01_18940at 911.169 kb on + strand, within CSW01_18940at 911.188 kb on + strand, within CSW01_18940at 911.440 kb on - strandat 911.445 kb on - strandat 911.591 kb on - strandat 911.605 kb on - strandat 911.605 kb on - strandat 911.716 kb on - strand, within CSW01_18945at 911.721 kb on - strand, within CSW01_18945at 911.721 kb on - strand, within CSW01_18945at 911.806 kb on - strand, within CSW01_18945at 911.853 kb on - strand, within CSW01_18945at 911.905 kb on - strand, within CSW01_18945at 911.997 kb on + strand, within CSW01_18945at 912.005 kb on - strand, within CSW01_18945at 912.010 kb on + strand, within CSW01_18945at 912.076 kb on - strand, within CSW01_18945at 912.173 kb on + strand, within CSW01_18945at 912.181 kb on - strand, within CSW01_18945at 912.254 kb on + strand, within CSW01_18945at 912.277 kb on + strand, within CSW01_18945at 912.312 kb on + strand, within CSW01_18945at 912.312 kb on + strand, within CSW01_18945at 912.312 kb on + strand, within CSW01_18945at 912.312 kb on + strand, within CSW01_18945at 912.312 kb on + strand, within CSW01_18945at 912.312 kb on + strand, within CSW01_18945at 912.320 kb on - strand, within CSW01_18945at 912.320 kb on - strand, within CSW01_18945at 912.320 kb on - strand, within CSW01_18945at 912.320 kb on - strand, within CSW01_18945at 912.320 kb on - strand, within CSW01_18945at 912.353 kb on + strandat 912.387 kb on - strandat 912.392 kb on + strandat 912.396 kb on - strandat 912.491 kb on + strandat 912.615 kb on + strandat 912.650 kb on - strandat 912.677 kb on + strandat 912.677 kb on + strandat 912.677 kb on + strandat 912.677 kb on + strandat 912.677 kb on + strandat 912.677 kb on + strandat 912.677 kb on + strandat 912.677 kb on + strandat 912.677 kb on + strandat 912.680 kb on - strandat 912.682 kb on + strandat 912.685 kb on - strandat 912.685 kb on - strandat 912.687 kb on + strandat 912.687 kb on + strandat 912.687 kb on + strandat 912.687 kb on + strandat 912.687 kb on + strandat 912.687 kb on + strandat 912.687 kb on + strandat 912.687 kb on + strandat 912.690 kb on - strandat 912.695 kb on - strandat 912.695 kb on - strandat 912.695 kb on - strandat 912.695 kb on - strandat 912.695 kb on - strandat 912.695 kb on - strandat 912.695 kb on - strandat 912.695 kb on - strandat 912.695 kb on - strandat 912.695 kb on - strandat 912.695 kb on - strandat 912.695 kb on - strandat 912.725 kb on + strand, within CSW01_18950at 912.743 kb on + strand, within CSW01_18950at 912.751 kb on - strand, within CSW01_18950at 912.757 kb on - strand, within CSW01_18950at 912.769 kb on + strand, within CSW01_18950at 912.832 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.870 kb on + strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.878 kb on - strand, within CSW01_18950at 912.881 kb on + strand, within CSW01_18950at 912.886 kb on + strand, within CSW01_18950at 912.886 kb on + strand, within CSW01_18950at 912.888 kb on - strand, within CSW01_18950at 912.889 kb on + strand, within CSW01_18950at 912.889 kb on - strand, within CSW01_18950at 912.891 kb on + strand, within CSW01_18950at 912.891 kb on + strand, within CSW01_18950at 912.891 kb on + strand, within CSW01_18950at 912.899 kb on - strand, within CSW01_18950at 912.901 kb on + strand, within CSW01_18950at 912.901 kb on + strand, within CSW01_18950at 912.909 kb on - strand, within CSW01_18950at 912.924 kb on + strand, within CSW01_18950at 912.927 kb on - strand, within CSW01_18950at 912.932 kb on - strand, within CSW01_18950at 912.942 kb on + strand, within CSW01_18950at 912.950 kb on - strand, within CSW01_18950at 912.954 kb on + strand, within CSW01_18950at 912.955 kb on + strand, within CSW01_18950at 912.955 kb on + strand, within CSW01_18950at 912.963 kb on - strand, within CSW01_18950at 912.963 kb on - strand, within CSW01_18950at 912.963 kb on - strand, within CSW01_18950at 912.974 kb on + strand, within CSW01_18950at 912.979 kb on + strand, within CSW01_18950at 912.979 kb on + strand, within CSW01_18950at 912.979 kb on + strand, within CSW01_18950at 912.979 kb on + strand, within CSW01_18950at 912.979 kb on + strand, within CSW01_18950at 912.979 kb on + strand, within CSW01_18950at 912.987 kb on + strand, within CSW01_18950at 912.987 kb on + strand, within CSW01_18950at 912.987 kb on + strand, within CSW01_18950at 912.987 kb on - strand, within CSW01_18950at 912.992 kb on + strand, within CSW01_18950at 912.995 kb on - strand, within CSW01_18950at 912.995 kb on - strand, within CSW01_18950at 913.000 kb on - strand, within CSW01_18950at 913.000 kb on - strand, within CSW01_18950at 913.000 kb on - strand, within CSW01_18950at 913.007 kb on - strand, within CSW01_18950at 913.014 kb on + strand, within CSW01_18950at 913.022 kb on - strand, within CSW01_18950at 913.022 kb on - strand, within CSW01_18950at 913.045 kb on + strand, within CSW01_18950at 913.053 kb on + strand, within CSW01_18950at 913.053 kb on + strand, within CSW01_18950at 913.053 kb on - strand, within CSW01_18950at 913.061 kb on - strand, within CSW01_18950at 913.061 kb on - strand, within CSW01_18950at 913.061 kb on - strand, within CSW01_18950at 913.061 kb on - strand, within CSW01_18950at 913.061 kb on - strand, within CSW01_18950at 913.066 kb on - strand, within CSW01_18950at 913.102 kb on + strand, within CSW01_18950at 913.110 kb on - strand, within CSW01_18950at 913.110 kb on - strand, within CSW01_18950at 913.167 kb on + strand, within CSW01_18950at 913.169 kb on + strand, within CSW01_18950at 913.175 kb on - strand, within CSW01_18950at 913.180 kb on + strand, within CSW01_18950at 913.180 kb on + strand, within CSW01_18950at 913.180 kb on + strand, within CSW01_18950at 913.188 kb on - strand, within CSW01_18950at 913.188 kb on - strand, within CSW01_18950at 913.188 kb on - strand, within CSW01_18950at 913.188 kb on - strand, within CSW01_18950at 913.188 kb on - strand, within CSW01_18950at 913.202 kb on + strand, within CSW01_18950at 913.210 kb on - strand, within CSW01_18950at 913.214 kb on + strand, within CSW01_18950at 913.253 kb on + strand, within CSW01_18950at 913.272 kb on + strand, within CSW01_18950at 913.280 kb on - strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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910,543 + -0.3
910,551 - +0.2
910,583 - +0.2
910,651 + CSW01_18940 0.15 -2.5
910,659 - CSW01_18940 0.16 -2.1
910,659 - CSW01_18940 0.16 -0.0
910,659 - CSW01_18940 0.16 +1.6
910,756 + CSW01_18940 0.26 +1.1
910,759 - CSW01_18940 0.27 +0.1
910,808 + CSW01_18940 0.32 -2.2
910,816 - CSW01_18940 0.33 +1.2
910,816 - CSW01_18940 0.33 +0.3
910,920 + CSW01_18940 0.44 +3.0
910,925 + CSW01_18940 0.45 -0.9
910,928 - CSW01_18940 0.45 +1.1
910,962 + CSW01_18940 0.49 +0.2
910,970 - CSW01_18940 0.50 +0.3
910,974 + CSW01_18940 0.50 -0.8
910,974 + CSW01_18940 0.50 +0.9
910,975 - CSW01_18940 0.50 -0.8
911,061 + CSW01_18940 0.59 +0.4
911,116 + CSW01_18940 0.65 -2.8
911,116 + CSW01_18940 0.65 +1.0
911,132 - CSW01_18940 0.67 +0.4
911,134 + CSW01_18940 0.67 -2.7
911,134 + CSW01_18940 0.67 +0.8
911,134 + CSW01_18940 0.67 -0.5
911,134 + CSW01_18940 0.67 -0.0
911,134 + CSW01_18940 0.67 +1.9
911,137 - CSW01_18940 0.68 -2.3
911,142 - CSW01_18940 0.68 +1.3
911,142 - CSW01_18940 0.68 -4.1
911,147 - CSW01_18940 0.69 +0.6
911,169 + CSW01_18940 0.71 +0.7
911,188 + CSW01_18940 0.73 -0.1
911,440 - -2.3
911,445 - -0.1
911,591 - +0.7
911,605 - +1.1
911,605 - -0.2
911,716 - CSW01_18945 0.20 -1.1
911,721 - CSW01_18945 0.20 +2.9
911,721 - CSW01_18945 0.20 -1.3
911,806 - CSW01_18945 0.30 -2.4
911,853 - CSW01_18945 0.35 +1.0
911,905 - CSW01_18945 0.41 -1.0
911,997 + CSW01_18945 0.51 +2.6
912,005 - CSW01_18945 0.52 +1.2
912,010 + CSW01_18945 0.52 -0.4
912,076 - CSW01_18945 0.60 -2.2
912,173 + CSW01_18945 0.70 +1.3
912,181 - CSW01_18945 0.71 +0.7
912,254 + CSW01_18945 0.79 +1.1
912,277 + CSW01_18945 0.82 +0.7
912,312 + CSW01_18945 0.86 -0.1
912,312 + CSW01_18945 0.86 +1.8
912,312 + CSW01_18945 0.86 -1.6
912,312 + CSW01_18945 0.86 -0.1
912,312 + CSW01_18945 0.86 -0.2
912,312 + CSW01_18945 0.86 -1.6
912,320 - CSW01_18945 0.87 +0.7
912,320 - CSW01_18945 0.87 +1.0
912,320 - CSW01_18945 0.87 +0.6
912,320 - CSW01_18945 0.87 -0.9
912,320 - CSW01_18945 0.87 -3.2
912,353 + -3.4
912,387 - +1.2
912,392 + +1.9
912,396 - -1.1
912,491 + -0.1
912,615 + -3.0
912,650 - -0.3
912,677 + -1.2
912,677 + +0.2
912,677 + +0.0
912,677 + -0.4
912,677 + -0.5
912,677 + -3.8
912,677 + -1.2
912,677 + +0.6
912,677 + +0.9
912,680 - -1.3
912,682 + +0.2
912,685 - +1.3
912,685 - +0.7
912,687 + -0.9
912,687 + +0.7
912,687 + -2.1
912,687 + -2.5
912,687 + -0.7
912,687 + -0.6
912,687 + +1.6
912,687 + -1.9
912,690 - -1.4
912,695 - +0.9
912,695 - +0.6
912,695 - -3.1
912,695 - -1.0
912,695 - +0.2
912,695 - -1.3
912,695 - -2.8
912,695 - +0.1
912,695 - +0.2
912,695 - -2.4
912,695 - -0.1
912,695 - -0.8
912,725 + CSW01_18950 0.11 +0.7
912,743 + CSW01_18950 0.13 +1.9
912,751 - CSW01_18950 0.13 +1.0
912,757 - CSW01_18950 0.14 -1.2
912,769 + CSW01_18950 0.15 +0.9
912,832 + CSW01_18950 0.20 -2.0
912,870 + CSW01_18950 0.23 +1.7
912,870 + CSW01_18950 0.23 +0.4
912,870 + CSW01_18950 0.23 +1.2
912,870 + CSW01_18950 0.23 -1.2
912,870 + CSW01_18950 0.23 -0.2
912,870 + CSW01_18950 0.23 +0.1
912,870 + CSW01_18950 0.23 +2.2
912,870 + CSW01_18950 0.23 -0.1
912,878 - CSW01_18950 0.24 +1.1
912,878 - CSW01_18950 0.24 +0.2
912,878 - CSW01_18950 0.24 -0.7
912,878 - CSW01_18950 0.24 +0.4
912,878 - CSW01_18950 0.24 -1.7
912,878 - CSW01_18950 0.24 -1.0
912,878 - CSW01_18950 0.24 -0.5
912,878 - CSW01_18950 0.24 +0.7
912,878 - CSW01_18950 0.24 +1.3
912,878 - CSW01_18950 0.24 -0.9
912,881 + CSW01_18950 0.24 +1.2
912,886 + CSW01_18950 0.25 -1.4
912,886 + CSW01_18950 0.25 -0.5
912,888 - CSW01_18950 0.25 -2.6
912,889 + CSW01_18950 0.25 +0.4
912,889 - CSW01_18950 0.25 +1.7
912,891 + CSW01_18950 0.25 -0.9
912,891 + CSW01_18950 0.25 -0.7
912,891 + CSW01_18950 0.25 +1.4
912,899 - CSW01_18950 0.26 -0.3
912,901 + CSW01_18950 0.26 +0.8
912,901 + CSW01_18950 0.26 -0.1
912,909 - CSW01_18950 0.27 -0.3
912,924 + CSW01_18950 0.28 -1.6
912,927 - CSW01_18950 0.28 +1.3
912,932 - CSW01_18950 0.28 +1.4
912,942 + CSW01_18950 0.29 +0.3
912,950 - CSW01_18950 0.30 +1.4
912,954 + CSW01_18950 0.30 -1.3
912,955 + CSW01_18950 0.30 +0.1
912,955 + CSW01_18950 0.30 +3.1
912,963 - CSW01_18950 0.31 +0.1
912,963 - CSW01_18950 0.31 -3.5
912,963 - CSW01_18950 0.31 +0.4
912,974 + CSW01_18950 0.32 -0.5
912,979 + CSW01_18950 0.32 -3.9
912,979 + CSW01_18950 0.32 -0.2
912,979 + CSW01_18950 0.32 +1.6
912,979 + CSW01_18950 0.32 +1.1
912,979 + CSW01_18950 0.32 -1.1
912,979 + CSW01_18950 0.32 -3.3
912,987 + CSW01_18950 0.33 -0.5
912,987 + CSW01_18950 0.33 -0.8
912,987 + CSW01_18950 0.33 +1.4
912,987 - CSW01_18950 0.33 -3.3
912,992 + CSW01_18950 0.34 -0.1
912,995 - CSW01_18950 0.34 -0.0
912,995 - CSW01_18950 0.34 +1.6
913,000 - CSW01_18950 0.34 +0.9
913,000 - CSW01_18950 0.34 +0.4
913,000 - CSW01_18950 0.34 +0.8
913,007 - CSW01_18950 0.35 -3.5
913,014 + CSW01_18950 0.35 +1.1
913,022 - CSW01_18950 0.36 +0.7
913,022 - CSW01_18950 0.36 +0.6
913,045 + CSW01_18950 0.38 -0.3
913,053 + CSW01_18950 0.39 -0.1
913,053 + CSW01_18950 0.39 -1.2
913,053 - CSW01_18950 0.39 -3.3
913,061 - CSW01_18950 0.39 +0.8
913,061 - CSW01_18950 0.39 -1.3
913,061 - CSW01_18950 0.39 -2.4
913,061 - CSW01_18950 0.39 -1.0
913,061 - CSW01_18950 0.39 +0.3
913,066 - CSW01_18950 0.40 -0.2
913,102 + CSW01_18950 0.43 -0.2
913,110 - CSW01_18950 0.43 -2.9
913,110 - CSW01_18950 0.43 +0.1
913,167 + CSW01_18950 0.48 -1.0
913,169 + CSW01_18950 0.48 +1.0
913,175 - CSW01_18950 0.49 -1.4
913,180 + CSW01_18950 0.49 -0.1
913,180 + CSW01_18950 0.49 -0.4
913,180 + CSW01_18950 0.49 +0.8
913,188 - CSW01_18950 0.50 +0.9
913,188 - CSW01_18950 0.50 -2.4
913,188 - CSW01_18950 0.50 +0.8
913,188 - CSW01_18950 0.50 +0.1
913,188 - CSW01_18950 0.50 +0.6
913,202 + CSW01_18950 0.51 +1.6
913,210 - CSW01_18950 0.52 -2.1
913,214 + CSW01_18950 0.52 -3.9
913,253 + CSW01_18950 0.55 -0.3
913,272 + CSW01_18950 0.57 -2.1
913,280 - CSW01_18950 0.58 +0.3
913,332 + CSW01_18950 0.62 -0.8
913,332 + CSW01_18950 0.62 -1.3
913,332 + CSW01_18950 0.62 -0.3
913,332 + CSW01_18950 0.62 -1.9
913,332 + CSW01_18950 0.62 +0.9
913,332 + CSW01_18950 0.62 -1.3
913,332 + CSW01_18950 0.62 +2.3
913,332 + CSW01_18950 0.62 -1.7
913,332 + CSW01_18950 0.62 -1.1
913,332 + CSW01_18950 0.62 +0.9
913,340 - CSW01_18950 0.63 +0.8
913,340 - CSW01_18950 0.63 +0.0
913,340 - CSW01_18950 0.63 -0.8
913,340 - CSW01_18950 0.63 +0.5
913,340 - CSW01_18950 0.63 +0.4

Or see this region's nucleotide sequence