Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18915

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18905 and CSW01_18910 are separated by 118 nucleotidesCSW01_18910 and CSW01_18915 are separated by 118 nucleotidesCSW01_18915 and CSW01_18920 overlap by 104 nucleotidesCSW01_18920 and CSW01_18925 are separated by 173 nucleotides CSW01_18905: CSW01_18905 - GGDEF domain-containing protein, at 903,007 to 904,026 _18905 CSW01_18910: CSW01_18910 - malate synthase, at 904,145 to 904,753 _18910 CSW01_18915: CSW01_18915 - DUF3612 domain-containing protein, at 904,872 to 906,389 _18915 CSW01_18920: CSW01_18920 - hypothetical protein, at 906,286 to 906,495 _18920 CSW01_18925: CSW01_18925 - sensor domain-containing diguanylate cyclase, at 906,669 to 908,042 _18925 Position (kb) 904 905 906 907Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 903.900 kb on + strand, within CSW01_18905at 903.944 kb on + strandat 904.020 kb on + strandat 904.020 kb on + strandat 904.028 kb on - strandat 904.028 kb on - strandat 904.028 kb on - strandat 904.082 kb on + strandat 904.090 kb on - strandat 904.090 kb on - strandat 904.184 kb on + strandat 904.194 kb on + strandat 904.194 kb on + strandat 904.229 kb on + strand, within CSW01_18910at 904.252 kb on + strand, within CSW01_18910at 904.260 kb on - strand, within CSW01_18910at 904.264 kb on + strand, within CSW01_18910at 904.283 kb on - strand, within CSW01_18910at 904.304 kb on + strand, within CSW01_18910at 904.351 kb on + strand, within CSW01_18910at 904.411 kb on - strand, within CSW01_18910at 904.411 kb on - strand, within CSW01_18910at 904.523 kb on + strand, within CSW01_18910at 904.726 kb on - strandat 904.978 kb on + strandat 904.998 kb on - strandat 905.285 kb on - strand, within CSW01_18915at 905.358 kb on - strand, within CSW01_18915at 905.400 kb on + strand, within CSW01_18915at 905.407 kb on + strand, within CSW01_18915at 905.429 kb on + strand, within CSW01_18915at 905.430 kb on - strand, within CSW01_18915at 905.443 kb on + strand, within CSW01_18915at 905.463 kb on - strand, within CSW01_18915at 905.463 kb on - strand, within CSW01_18915at 905.467 kb on + strand, within CSW01_18915at 905.467 kb on + strand, within CSW01_18915at 905.475 kb on - strand, within CSW01_18915at 905.578 kb on + strand, within CSW01_18915at 905.591 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.744 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.749 kb on + strand, within CSW01_18915at 905.757 kb on - strand, within CSW01_18915at 905.861 kb on + strand, within CSW01_18915at 905.874 kb on - strand, within CSW01_18915at 905.888 kb on + strand, within CSW01_18915at 905.921 kb on - strand, within CSW01_18915at 905.921 kb on - strand, within CSW01_18915at 905.989 kb on - strand, within CSW01_18915at 906.015 kb on + strand, within CSW01_18915at 906.015 kb on + strand, within CSW01_18915at 906.091 kb on + strand, within CSW01_18915at 906.165 kb on + strand, within CSW01_18915at 906.219 kb on + strand, within CSW01_18915at 906.284 kb on - strandat 906.297 kb on + strandat 906.425 kb on + strand, within CSW01_18920at 906.481 kb on + strandat 906.686 kb on + strandat 906.736 kb on - strandat 906.916 kb on + strand, within CSW01_18925at 906.916 kb on + strand, within CSW01_18925at 907.103 kb on + strand, within CSW01_18925at 907.103 kb on + strand, within CSW01_18925at 907.123 kb on - strand, within CSW01_18925at 907.200 kb on + strand, within CSW01_18925

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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903,900 + CSW01_18905 0.88 -0.4
903,944 + -3.1
904,020 + +0.2
904,020 + +1.4
904,028 - +0.6
904,028 - +0.2
904,028 - +0.5
904,082 + +1.8
904,090 - +3.3
904,090 - +0.9
904,184 + +1.6
904,194 + -0.9
904,194 + +0.7
904,229 + CSW01_18910 0.14 -0.7
904,252 + CSW01_18910 0.18 +0.4
904,260 - CSW01_18910 0.19 -1.8
904,264 + CSW01_18910 0.20 +0.2
904,283 - CSW01_18910 0.23 -0.8
904,304 + CSW01_18910 0.26 -0.1
904,351 + CSW01_18910 0.34 +0.2
904,411 - CSW01_18910 0.44 -0.7
904,411 - CSW01_18910 0.44 +1.0
904,523 + CSW01_18910 0.62 -0.1
904,726 - -1.9
904,978 + +1.4
904,998 - -0.9
905,285 - CSW01_18915 0.27 -0.4
905,358 - CSW01_18915 0.32 +1.5
905,400 + CSW01_18915 0.35 +0.4
905,407 + CSW01_18915 0.35 -0.4
905,429 + CSW01_18915 0.37 -2.4
905,430 - CSW01_18915 0.37 +0.7
905,443 + CSW01_18915 0.38 +1.4
905,463 - CSW01_18915 0.39 +1.5
905,463 - CSW01_18915 0.39 -0.3
905,467 + CSW01_18915 0.39 -1.7
905,467 + CSW01_18915 0.39 +0.5
905,475 - CSW01_18915 0.40 -0.1
905,578 + CSW01_18915 0.47 -2.1
905,591 + CSW01_18915 0.47 -2.4
905,744 + CSW01_18915 0.57 +1.2
905,744 + CSW01_18915 0.57 -0.3
905,744 + CSW01_18915 0.57 -0.4
905,744 + CSW01_18915 0.57 +1.8
905,749 + CSW01_18915 0.58 +1.5
905,749 + CSW01_18915 0.58 +0.2
905,749 + CSW01_18915 0.58 +1.1
905,749 + CSW01_18915 0.58 +2.2
905,749 + CSW01_18915 0.58 -0.7
905,749 + CSW01_18915 0.58 +1.1
905,749 + CSW01_18915 0.58 +0.6
905,757 - CSW01_18915 0.58 -1.4
905,861 + CSW01_18915 0.65 -0.7
905,874 - CSW01_18915 0.66 -0.1
905,888 + CSW01_18915 0.67 +0.4
905,921 - CSW01_18915 0.69 -2.8
905,921 - CSW01_18915 0.69 +0.5
905,989 - CSW01_18915 0.74 -0.4
906,015 + CSW01_18915 0.75 -0.2
906,015 + CSW01_18915 0.75 -2.3
906,091 + CSW01_18915 0.80 +1.5
906,165 + CSW01_18915 0.85 +0.1
906,219 + CSW01_18915 0.89 +0.7
906,284 - +0.6
906,297 + -0.4
906,425 + CSW01_18920 0.66 -2.1
906,481 + -1.1
906,686 + +0.9
906,736 - -0.2
906,916 + CSW01_18925 0.18 +0.0
906,916 + CSW01_18925 0.18 +1.5
907,103 + CSW01_18925 0.32 +1.2
907,103 + CSW01_18925 0.32 -0.4
907,123 - CSW01_18925 0.33 -3.0
907,200 + CSW01_18925 0.39 -0.6

Or see this region's nucleotide sequence