Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18785

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18780 and CSW01_18785 are separated by 113 nucleotidesCSW01_18785 and CSW01_18790 are separated by 112 nucleotides CSW01_18780: CSW01_18780 - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 880,235 to 881,362 _18780 CSW01_18785: CSW01_18785 - DUF808 domain-containing protein, at 881,476 to 882,411 _18785 CSW01_18790: CSW01_18790 - metal-dependent phosphohydrolase, at 882,524 to 883,906 _18790 Position (kb) 881 882 883Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 880.606 kb on - strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.608 kb on + strand, within CSW01_18780at 880.616 kb on - strand, within CSW01_18780at 880.616 kb on - strand, within CSW01_18780at 880.616 kb on - strand, within CSW01_18780at 880.616 kb on - strand, within CSW01_18780at 880.696 kb on + strand, within CSW01_18780at 880.772 kb on - strand, within CSW01_18780at 880.772 kb on - strand, within CSW01_18780at 880.842 kb on + strand, within CSW01_18780at 880.881 kb on + strand, within CSW01_18780at 881.000 kb on - strand, within CSW01_18780at 881.027 kb on + strand, within CSW01_18780at 881.094 kb on - strand, within CSW01_18780at 881.128 kb on - strand, within CSW01_18780at 881.234 kb on + strand, within CSW01_18780at 881.283 kb on + strandat 881.293 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.298 kb on + strandat 881.306 kb on - strandat 881.306 kb on - strandat 881.306 kb on - strandat 881.333 kb on - strandat 881.359 kb on + strandat 881.359 kb on + strandat 881.359 kb on + strandat 881.367 kb on - strandat 881.367 kb on - strandat 881.367 kb on - strandat 881.367 kb on - strandat 881.372 kb on - strandat 881.521 kb on - strandat 881.556 kb on + strandat 881.573 kb on - strand, within CSW01_18785at 881.582 kb on + strand, within CSW01_18785at 881.681 kb on + strand, within CSW01_18785at 881.689 kb on - strand, within CSW01_18785at 881.700 kb on - strand, within CSW01_18785at 881.763 kb on - strand, within CSW01_18785at 881.769 kb on - strand, within CSW01_18785at 881.805 kb on + strand, within CSW01_18785at 881.898 kb on + strand, within CSW01_18785at 881.901 kb on - strand, within CSW01_18785at 881.901 kb on - strand, within CSW01_18785at 881.905 kb on + strand, within CSW01_18785at 881.937 kb on + strand, within CSW01_18785at 881.993 kb on - strand, within CSW01_18785at 882.051 kb on + strand, within CSW01_18785at 882.051 kb on + strand, within CSW01_18785at 882.059 kb on - strand, within CSW01_18785at 882.059 kb on - strand, within CSW01_18785at 882.069 kb on + strand, within CSW01_18785at 882.069 kb on - strand, within CSW01_18785at 882.139 kb on + strand, within CSW01_18785at 882.141 kb on + strand, within CSW01_18785at 882.162 kb on - strand, within CSW01_18785at 882.358 kb on + strandat 882.450 kb on + strandat 882.520 kb on - strandat 882.527 kb on + strandat 882.540 kb on - strandat 882.550 kb on - strandat 882.685 kb on + strand, within CSW01_18790at 882.690 kb on + strand, within CSW01_18790at 882.690 kb on + strand, within CSW01_18790at 882.690 kb on + strand, within CSW01_18790at 882.698 kb on - strand, within CSW01_18790at 882.698 kb on - strand, within CSW01_18790at 882.698 kb on - strand, within CSW01_18790at 882.743 kb on + strand, within CSW01_18790at 882.809 kb on - strand, within CSW01_18790at 882.832 kb on - strand, within CSW01_18790at 882.840 kb on - strand, within CSW01_18790at 882.842 kb on + strand, within CSW01_18790at 882.867 kb on + strand, within CSW01_18790at 882.872 kb on + strand, within CSW01_18790at 882.880 kb on - strand, within CSW01_18790at 882.880 kb on - strand, within CSW01_18790at 882.880 kb on - strand, within CSW01_18790at 882.969 kb on - strand, within CSW01_18790at 883.028 kb on + strand, within CSW01_18790at 883.036 kb on + strand, within CSW01_18790at 883.054 kb on + strand, within CSW01_18790at 883.197 kb on - strand, within CSW01_18790at 883.291 kb on - strand, within CSW01_18790at 883.304 kb on + strand, within CSW01_18790at 883.305 kb on - strand, within CSW01_18790at 883.377 kb on + strand, within CSW01_18790at 883.378 kb on - strand, within CSW01_18790at 883.397 kb on + strand, within CSW01_18790at 883.397 kb on + strand, within CSW01_18790at 883.405 kb on - strand, within CSW01_18790at 883.405 kb on - strand, within CSW01_18790at 883.405 kb on - strand, within CSW01_18790

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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880,606 - CSW01_18780 0.33 -2.4
880,608 + CSW01_18780 0.33 -0.1
880,608 + CSW01_18780 0.33 +0.8
880,608 + CSW01_18780 0.33 +0.3
880,608 + CSW01_18780 0.33 +0.0
880,608 + CSW01_18780 0.33 -1.4
880,608 + CSW01_18780 0.33 +1.0
880,608 + CSW01_18780 0.33 -0.3
880,616 - CSW01_18780 0.34 +0.4
880,616 - CSW01_18780 0.34 +1.5
880,616 - CSW01_18780 0.34 +1.7
880,616 - CSW01_18780 0.34 -1.9
880,696 + CSW01_18780 0.41 +0.1
880,772 - CSW01_18780 0.48 +1.8
880,772 - CSW01_18780 0.48 +0.9
880,842 + CSW01_18780 0.54 +1.4
880,881 + CSW01_18780 0.57 -2.4
881,000 - CSW01_18780 0.68 +1.3
881,027 + CSW01_18780 0.70 +0.9
881,094 - CSW01_18780 0.76 +1.8
881,128 - CSW01_18780 0.79 -2.4
881,234 + CSW01_18780 0.89 -1.1
881,283 + +0.6
881,293 + -0.1
881,298 + -1.7
881,298 + -0.8
881,298 + -0.4
881,298 + -1.4
881,298 + +1.4
881,298 + -0.5
881,306 - -4.0
881,306 - +1.1
881,306 - +0.4
881,333 - -0.1
881,359 + -0.7
881,359 + -1.7
881,359 + -1.3
881,367 - +0.5
881,367 - +1.1
881,367 - -1.3
881,367 - +0.7
881,372 - -0.2
881,521 - +0.2
881,556 + -1.7
881,573 - CSW01_18785 0.10 +1.9
881,582 + CSW01_18785 0.11 -1.4
881,681 + CSW01_18785 0.22 -1.0
881,689 - CSW01_18785 0.23 +0.3
881,700 - CSW01_18785 0.24 -0.1
881,763 - CSW01_18785 0.31 +0.1
881,769 - CSW01_18785 0.31 -1.3
881,805 + CSW01_18785 0.35 -2.6
881,898 + CSW01_18785 0.45 -0.9
881,901 - CSW01_18785 0.45 -0.8
881,901 - CSW01_18785 0.45 +0.8
881,905 + CSW01_18785 0.46 +1.4
881,937 + CSW01_18785 0.49 +1.1
881,993 - CSW01_18785 0.55 -0.8
882,051 + CSW01_18785 0.61 -1.1
882,051 + CSW01_18785 0.61 -2.4
882,059 - CSW01_18785 0.62 +0.7
882,059 - CSW01_18785 0.62 -1.7
882,069 + CSW01_18785 0.63 -3.2
882,069 - CSW01_18785 0.63 +0.9
882,139 + CSW01_18785 0.71 -0.5
882,141 + CSW01_18785 0.71 +0.5
882,162 - CSW01_18785 0.73 -3.3
882,358 + +0.0
882,450 + -3.1
882,520 - -0.1
882,527 + +0.6
882,540 - +0.5
882,550 - -0.3
882,685 + CSW01_18790 0.12 -0.9
882,690 + CSW01_18790 0.12 +0.1
882,690 + CSW01_18790 0.12 -1.9
882,690 + CSW01_18790 0.12 +0.6
882,698 - CSW01_18790 0.13 -0.9
882,698 - CSW01_18790 0.13 -0.9
882,698 - CSW01_18790 0.13 +1.0
882,743 + CSW01_18790 0.16 -2.8
882,809 - CSW01_18790 0.21 -2.6
882,832 - CSW01_18790 0.22 -2.4
882,840 - CSW01_18790 0.23 +1.0
882,842 + CSW01_18790 0.23 -0.7
882,867 + CSW01_18790 0.25 +0.3
882,872 + CSW01_18790 0.25 -2.7
882,880 - CSW01_18790 0.26 +0.0
882,880 - CSW01_18790 0.26 -3.6
882,880 - CSW01_18790 0.26 -0.2
882,969 - CSW01_18790 0.32 -0.3
883,028 + CSW01_18790 0.36 +0.6
883,036 + CSW01_18790 0.37 -2.8
883,054 + CSW01_18790 0.38 +0.3
883,197 - CSW01_18790 0.49 -3.4
883,291 - CSW01_18790 0.55 -0.7
883,304 + CSW01_18790 0.56 -0.7
883,305 - CSW01_18790 0.56 +2.1
883,377 + CSW01_18790 0.62 +0.8
883,378 - CSW01_18790 0.62 +0.1
883,397 + CSW01_18790 0.63 +1.0
883,397 + CSW01_18790 0.63 -1.4
883,405 - CSW01_18790 0.64 -0.4
883,405 - CSW01_18790 0.64 -1.2
883,405 - CSW01_18790 0.64 -1.1

Or see this region's nucleotide sequence