Experiment: ICP3_phage_41.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18005 and CSW01_18010 are separated by 128 nucleotides CSW01_18010 and CSW01_18015 are separated by 103 nucleotides CSW01_18015 and CSW01_18020 are separated by 99 nucleotides
CSW01_18005: CSW01_18005 - low-specificity L-threonine aldolase, at 707,227 to 708,258
_18005
CSW01_18010: CSW01_18010 - cytochrome C554, at 708,387 to 708,695
_18010
CSW01_18015: CSW01_18015 - TetR/AcrR family transcriptional regulator, at 708,799 to 709,533
_18015
CSW01_18020: CSW01_18020 - DEAD/DEAH box helicase, at 709,633 to 710,901
_18020
Position (kb) 708
709 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 707.406 kb on + strand, within CSW01_18005 at 707.406 kb on + strand, within CSW01_18005 at 707.414 kb on - strand, within CSW01_18005 at 707.500 kb on - strand, within CSW01_18005 at 707.519 kb on + strand, within CSW01_18005 at 707.778 kb on + strand, within CSW01_18005 at 707.873 kb on + strand, within CSW01_18005 at 707.991 kb on + strand, within CSW01_18005 at 707.991 kb on + strand, within CSW01_18005 at 707.991 kb on + strand, within CSW01_18005 at 707.999 kb on - strand, within CSW01_18005 at 707.999 kb on - strand, within CSW01_18005 at 708.076 kb on - strand, within CSW01_18005 at 708.097 kb on + strand, within CSW01_18005 at 708.168 kb on + strand at 708.168 kb on + strand at 708.176 kb on - strand at 708.201 kb on - strand at 708.201 kb on - strand at 708.209 kb on - strand at 708.245 kb on + strand at 708.284 kb on + strand at 708.292 kb on - strand at 708.313 kb on + strand at 708.313 kb on + strand at 708.337 kb on + strand at 708.357 kb on + strand at 708.400 kb on + strand at 708.424 kb on - strand, within CSW01_18010 at 708.489 kb on - strand, within CSW01_18010 at 708.617 kb on + strand, within CSW01_18010 at 708.625 kb on - strand, within CSW01_18010 at 708.757 kb on - strand at 708.779 kb on + strand at 708.787 kb on - strand at 708.872 kb on + strand at 708.882 kb on + strand, within CSW01_18015 at 708.904 kb on - strand, within CSW01_18015 at 709.044 kb on + strand, within CSW01_18015 at 709.044 kb on + strand, within CSW01_18015 at 709.044 kb on + strand, within CSW01_18015 at 709.052 kb on - strand, within CSW01_18015 at 709.052 kb on - strand, within CSW01_18015 at 709.058 kb on - strand, within CSW01_18015 at 709.084 kb on - strand, within CSW01_18015 at 709.084 kb on - strand, within CSW01_18015 at 709.199 kb on + strand, within CSW01_18015 at 709.207 kb on - strand, within CSW01_18015 at 709.250 kb on - strand, within CSW01_18015 at 709.341 kb on - strand, within CSW01_18015 at 709.412 kb on - strand, within CSW01_18015 at 709.443 kb on + strand, within CSW01_18015 at 709.443 kb on + strand, within CSW01_18015 at 709.456 kb on - strand, within CSW01_18015 at 709.466 kb on - strand at 709.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1 remove 707,406 + CSW01_18005 0.17 +0.1 707,406 + CSW01_18005 0.17 +0.7 707,414 - CSW01_18005 0.18 +0.3 707,500 - CSW01_18005 0.26 +0.6 707,519 + CSW01_18005 0.28 -3.0 707,778 + CSW01_18005 0.53 +0.2 707,873 + CSW01_18005 0.63 +1.1 707,991 + CSW01_18005 0.74 -2.7 707,991 + CSW01_18005 0.74 +1.9 707,991 + CSW01_18005 0.74 -1.6 707,999 - CSW01_18005 0.75 +0.3 707,999 - CSW01_18005 0.75 -1.2 708,076 - CSW01_18005 0.82 +0.3 708,097 + CSW01_18005 0.84 +0.2 708,168 + +2.9 708,168 + -3.6 708,176 - -1.5 708,201 - -4.0 708,201 - -2.1 708,209 - -1.9 708,245 + +0.4 708,284 + -3.3 708,292 - +1.1 708,313 + +0.3 708,313 + -2.7 708,337 + +0.1 708,357 + +0.3 708,400 + -3.4 708,424 - CSW01_18010 0.12 +0.4 708,489 - CSW01_18010 0.33 -1.5 708,617 + CSW01_18010 0.74 -2.4 708,625 - CSW01_18010 0.77 +0.5 708,757 - -0.2 708,779 + +0.1 708,787 - -1.7 708,872 + +0.1 708,882 + CSW01_18015 0.11 +0.3 708,904 - CSW01_18015 0.14 +2.7 709,044 + CSW01_18015 0.33 +0.6 709,044 + CSW01_18015 0.33 -2.4 709,044 + CSW01_18015 0.33 -0.9 709,052 - CSW01_18015 0.34 -0.2 709,052 - CSW01_18015 0.34 -1.3 709,058 - CSW01_18015 0.35 -2.6 709,084 - CSW01_18015 0.39 +0.9 709,084 - CSW01_18015 0.39 +0.7 709,199 + CSW01_18015 0.54 +1.2 709,207 - CSW01_18015 0.56 -2.3 709,250 - CSW01_18015 0.61 -2.4 709,341 - CSW01_18015 0.74 -1.4 709,412 - CSW01_18015 0.83 -2.0 709,443 + CSW01_18015 0.88 -0.2 709,443 + CSW01_18015 0.88 -1.6 709,456 - CSW01_18015 0.89 +1.0 709,466 - -0.7 709,487 - -1.5
Or see this region's nucleotide sequence