Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17705

Experiment: ICP3_phage_41.1_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17700 and CSW01_17705 overlap by 83 nucleotidesCSW01_17705 and CSW01_17710 overlap by 4 nucleotides CSW01_17700: CSW01_17700 - sigma-54-dependent Fis family transcriptional regulator, at 642,751 to 644,070 _17700 CSW01_17705: CSW01_17705 - two-component sensor histidine kinase, at 643,988 to 646,357 _17705 CSW01_17710: CSW01_17710 - phosphoglycerate transport regulatory protein PgtC, at 646,354 to 647,676 _17710 Position (kb) 643 644 645 646 647Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 643.001 kb on + strand, within CSW01_17700at 643.009 kb on - strand, within CSW01_17700at 643.009 kb on - strand, within CSW01_17700at 643.070 kb on + strand, within CSW01_17700at 643.075 kb on + strand, within CSW01_17700at 643.092 kb on + strand, within CSW01_17700at 643.100 kb on - strand, within CSW01_17700at 643.100 kb on - strand, within CSW01_17700at 643.298 kb on + strand, within CSW01_17700at 643.306 kb on + strand, within CSW01_17700at 643.326 kb on - strand, within CSW01_17700at 643.349 kb on - strand, within CSW01_17700at 643.378 kb on + strand, within CSW01_17700at 643.386 kb on - strand, within CSW01_17700at 643.431 kb on + strand, within CSW01_17700at 643.431 kb on + strand, within CSW01_17700at 643.441 kb on + strand, within CSW01_17700at 643.449 kb on - strand, within CSW01_17700at 643.656 kb on + strand, within CSW01_17700at 643.729 kb on + strand, within CSW01_17700at 643.762 kb on + strand, within CSW01_17700at 643.770 kb on - strand, within CSW01_17700at 643.805 kb on + strand, within CSW01_17700at 643.805 kb on + strand, within CSW01_17700at 643.805 kb on + strand, within CSW01_17700at 643.805 kb on + strand, within CSW01_17700at 643.839 kb on + strand, within CSW01_17700at 644.006 kb on - strandat 644.126 kb on + strandat 644.186 kb on + strandat 644.187 kb on - strandat 644.196 kb on + strandat 644.204 kb on - strandat 644.227 kb on + strand, within CSW01_17705at 644.230 kb on - strand, within CSW01_17705at 644.240 kb on - strand, within CSW01_17705at 644.253 kb on + strand, within CSW01_17705at 644.261 kb on - strand, within CSW01_17705at 644.270 kb on + strand, within CSW01_17705at 644.307 kb on + strand, within CSW01_17705at 644.307 kb on + strand, within CSW01_17705at 644.307 kb on + strand, within CSW01_17705at 644.315 kb on - strand, within CSW01_17705at 644.317 kb on + strand, within CSW01_17705at 644.325 kb on - strand, within CSW01_17705at 644.498 kb on - strand, within CSW01_17705at 644.561 kb on + strand, within CSW01_17705at 644.561 kb on + strand, within CSW01_17705at 644.730 kb on - strand, within CSW01_17705at 644.842 kb on + strand, within CSW01_17705at 645.137 kb on - strand, within CSW01_17705at 645.137 kb on - strand, within CSW01_17705at 645.154 kb on + strand, within CSW01_17705at 645.158 kb on - strand, within CSW01_17705at 645.171 kb on - strand, within CSW01_17705at 645.222 kb on + strand, within CSW01_17705at 645.283 kb on + strand, within CSW01_17705at 645.290 kb on + strand, within CSW01_17705at 645.297 kb on - strand, within CSW01_17705at 645.313 kb on - strand, within CSW01_17705at 645.344 kb on - strand, within CSW01_17705at 645.373 kb on + strand, within CSW01_17705at 645.373 kb on + strand, within CSW01_17705at 645.373 kb on + strand, within CSW01_17705at 645.373 kb on + strand, within CSW01_17705at 645.373 kb on + strand, within CSW01_17705at 645.381 kb on - strand, within CSW01_17705at 645.386 kb on - strand, within CSW01_17705at 645.488 kb on - strand, within CSW01_17705at 645.490 kb on + strand, within CSW01_17705at 645.544 kb on + strand, within CSW01_17705at 645.552 kb on - strand, within CSW01_17705at 645.587 kb on + strand, within CSW01_17705at 645.815 kb on + strand, within CSW01_17705at 645.860 kb on + strand, within CSW01_17705at 645.894 kb on - strand, within CSW01_17705at 645.942 kb on - strand, within CSW01_17705at 645.942 kb on - strand, within CSW01_17705at 645.951 kb on + strand, within CSW01_17705at 645.955 kb on - strand, within CSW01_17705at 645.975 kb on + strand, within CSW01_17705at 645.983 kb on - strand, within CSW01_17705at 646.162 kb on + strandat 646.170 kb on - strandat 646.170 kb on - strandat 646.199 kb on + strandat 646.250 kb on + strandat 646.268 kb on - strandat 646.274 kb on + strandat 646.274 kb on + strandat 646.274 kb on + strandat 646.282 kb on - strandat 646.329 kb on - strandat 646.329 kb on - strandat 646.329 kb on - strandat 646.496 kb on - strand, within CSW01_17710at 646.557 kb on - strand, within CSW01_17710at 646.580 kb on - strand, within CSW01_17710at 646.607 kb on + strand, within CSW01_17710at 646.812 kb on - strand, within CSW01_17710at 646.812 kb on - strand, within CSW01_17710at 646.814 kb on + strand, within CSW01_17710at 646.992 kb on - strand, within CSW01_17710at 647.029 kb on + strand, within CSW01_17710at 647.108 kb on - strand, within CSW01_17710at 647.137 kb on - strand, within CSW01_17710at 647.139 kb on + strand, within CSW01_17710at 647.144 kb on + strand, within CSW01_17710at 647.152 kb on - strand, within CSW01_17710at 647.152 kb on - strand, within CSW01_17710at 647.233 kb on + strand, within CSW01_17710at 647.241 kb on - strand, within CSW01_17710at 647.253 kb on - strand, within CSW01_17710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
remove
643,001 + CSW01_17700 0.19 -2.2
643,009 - CSW01_17700 0.20 -3.1
643,009 - CSW01_17700 0.20 +1.1
643,070 + CSW01_17700 0.24 +0.1
643,075 + CSW01_17700 0.25 -1.0
643,092 + CSW01_17700 0.26 +1.0
643,100 - CSW01_17700 0.26 +0.2
643,100 - CSW01_17700 0.26 +0.6
643,298 + CSW01_17700 0.41 +0.7
643,306 + CSW01_17700 0.42 -2.2
643,326 - CSW01_17700 0.44 +1.1
643,349 - CSW01_17700 0.45 -0.1
643,378 + CSW01_17700 0.47 -2.1
643,386 - CSW01_17700 0.48 +1.3
643,431 + CSW01_17700 0.52 -2.7
643,431 + CSW01_17700 0.52 +1.0
643,441 + CSW01_17700 0.52 -1.6
643,449 - CSW01_17700 0.53 -1.6
643,656 + CSW01_17700 0.69 +0.4
643,729 + CSW01_17700 0.74 -0.3
643,762 + CSW01_17700 0.77 +0.1
643,770 - CSW01_17700 0.77 +0.7
643,805 + CSW01_17700 0.80 -2.5
643,805 + CSW01_17700 0.80 -0.8
643,805 + CSW01_17700 0.80 -0.4
643,805 + CSW01_17700 0.80 -1.2
643,839 + CSW01_17700 0.82 -3.4
644,006 - +0.8
644,126 + +0.7
644,186 + -1.9
644,187 - +0.6
644,196 + -0.6
644,204 - -0.1
644,227 + CSW01_17705 0.10 +2.2
644,230 - CSW01_17705 0.10 -0.2
644,240 - CSW01_17705 0.11 +0.1
644,253 + CSW01_17705 0.11 +0.1
644,261 - CSW01_17705 0.12 +0.5
644,270 + CSW01_17705 0.12 -1.0
644,307 + CSW01_17705 0.13 +0.2
644,307 + CSW01_17705 0.13 +0.7
644,307 + CSW01_17705 0.13 +0.9
644,315 - CSW01_17705 0.14 +0.8
644,317 + CSW01_17705 0.14 +0.0
644,325 - CSW01_17705 0.14 +0.2
644,498 - CSW01_17705 0.22 -1.0
644,561 + CSW01_17705 0.24 +0.4
644,561 + CSW01_17705 0.24 -0.6
644,730 - CSW01_17705 0.31 -0.2
644,842 + CSW01_17705 0.36 +1.2
645,137 - CSW01_17705 0.48 +0.7
645,137 - CSW01_17705 0.48 +0.1
645,154 + CSW01_17705 0.49 -1.2
645,158 - CSW01_17705 0.49 +0.1
645,171 - CSW01_17705 0.50 -0.2
645,222 + CSW01_17705 0.52 -1.0
645,283 + CSW01_17705 0.55 -0.8
645,290 + CSW01_17705 0.55 +0.1
645,297 - CSW01_17705 0.55 +2.2
645,313 - CSW01_17705 0.56 +1.2
645,344 - CSW01_17705 0.57 -3.2
645,373 + CSW01_17705 0.58 +0.3
645,373 + CSW01_17705 0.58 -2.8
645,373 + CSW01_17705 0.58 +1.7
645,373 + CSW01_17705 0.58 +0.8
645,373 + CSW01_17705 0.58 -0.0
645,381 - CSW01_17705 0.59 -1.4
645,386 - CSW01_17705 0.59 +1.2
645,488 - CSW01_17705 0.63 -0.9
645,490 + CSW01_17705 0.63 +1.3
645,544 + CSW01_17705 0.66 -0.2
645,552 - CSW01_17705 0.66 -1.5
645,587 + CSW01_17705 0.67 +0.4
645,815 + CSW01_17705 0.77 -1.5
645,860 + CSW01_17705 0.79 -0.6
645,894 - CSW01_17705 0.80 +0.9
645,942 - CSW01_17705 0.82 -0.2
645,942 - CSW01_17705 0.82 +2.7
645,951 + CSW01_17705 0.83 +0.4
645,955 - CSW01_17705 0.83 +1.0
645,975 + CSW01_17705 0.84 +0.1
645,983 - CSW01_17705 0.84 +0.1
646,162 + +0.7
646,170 - +0.2
646,170 - -1.6
646,199 + +0.6
646,250 + -0.6
646,268 - +1.0
646,274 + -0.7
646,274 + -0.6
646,274 + -0.3
646,282 - -0.2
646,329 - -0.2
646,329 - -1.6
646,329 - +0.6
646,496 - CSW01_17710 0.11 -1.0
646,557 - CSW01_17710 0.15 -2.1
646,580 - CSW01_17710 0.17 +0.3
646,607 + CSW01_17710 0.19 +0.3
646,812 - CSW01_17710 0.35 -0.3
646,812 - CSW01_17710 0.35 -0.1
646,814 + CSW01_17710 0.35 +0.3
646,992 - CSW01_17710 0.48 +0.5
647,029 + CSW01_17710 0.51 +1.0
647,108 - CSW01_17710 0.57 +1.5
647,137 - CSW01_17710 0.59 -1.2
647,139 + CSW01_17710 0.59 +1.3
647,144 + CSW01_17710 0.60 +0.0
647,152 - CSW01_17710 0.60 +0.8
647,152 - CSW01_17710 0.60 +0.5
647,233 + CSW01_17710 0.66 -0.4
647,241 - CSW01_17710 0.67 -2.5
647,253 - CSW01_17710 0.68 +0.3

Or see this region's nucleotide sequence