Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17625

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17620 and CSW01_17625 are separated by 103 nucleotidesCSW01_17625 and CSW01_17630 are separated by 11 nucleotides CSW01_17620: CSW01_17620 - iron(III) ABC transporter substrate-binding protein, at 619,682 to 620,716 _17620 CSW01_17625: CSW01_17625 - iron ABC transporter permease, at 620,820 to 622,922 _17625 CSW01_17630: CSW01_17630 - Fe(3+) ions import ATP-binding protein FbpC, at 622,934 to 623,989 _17630 Position (kb) 620 621 622 623Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 619.975 kb on + strand, within CSW01_17620at 620.002 kb on + strand, within CSW01_17620at 620.058 kb on - strand, within CSW01_17620at 620.087 kb on + strand, within CSW01_17620at 620.095 kb on - strand, within CSW01_17620at 620.103 kb on - strand, within CSW01_17620at 620.206 kb on + strand, within CSW01_17620at 620.241 kb on + strand, within CSW01_17620at 620.336 kb on - strand, within CSW01_17620at 620.336 kb on - strand, within CSW01_17620at 620.346 kb on - strand, within CSW01_17620at 620.379 kb on + strand, within CSW01_17620at 620.379 kb on + strand, within CSW01_17620at 620.397 kb on - strand, within CSW01_17620at 620.397 kb on - strand, within CSW01_17620at 620.410 kb on - strand, within CSW01_17620at 620.435 kb on + strand, within CSW01_17620at 620.546 kb on - strand, within CSW01_17620at 620.624 kb on - strandat 620.655 kb on + strandat 620.655 kb on + strandat 620.766 kb on + strandat 620.766 kb on + strandat 620.774 kb on - strandat 620.774 kb on - strandat 620.774 kb on - strandat 620.784 kb on - strandat 620.794 kb on + strandat 620.794 kb on + strandat 620.802 kb on - strandat 620.948 kb on - strandat 621.001 kb on - strandat 621.001 kb on - strandat 621.074 kb on - strand, within CSW01_17625at 621.083 kb on - strand, within CSW01_17625at 621.083 kb on - strand, within CSW01_17625at 621.112 kb on + strand, within CSW01_17625at 621.121 kb on + strand, within CSW01_17625at 621.153 kb on - strand, within CSW01_17625at 621.153 kb on - strand, within CSW01_17625at 621.210 kb on + strand, within CSW01_17625at 621.280 kb on + strand, within CSW01_17625at 621.359 kb on + strand, within CSW01_17625at 621.400 kb on + strand, within CSW01_17625at 621.408 kb on - strand, within CSW01_17625at 621.414 kb on - strand, within CSW01_17625at 621.440 kb on - strand, within CSW01_17625at 621.594 kb on - strand, within CSW01_17625at 621.628 kb on - strand, within CSW01_17625at 621.677 kb on + strand, within CSW01_17625at 621.685 kb on - strand, within CSW01_17625at 621.743 kb on - strand, within CSW01_17625at 621.827 kb on + strand, within CSW01_17625at 621.827 kb on + strand, within CSW01_17625at 621.827 kb on + strand, within CSW01_17625at 621.827 kb on + strand, within CSW01_17625at 621.835 kb on - strand, within CSW01_17625at 621.835 kb on - strand, within CSW01_17625at 621.900 kb on + strand, within CSW01_17625at 621.921 kb on - strand, within CSW01_17625at 621.982 kb on + strand, within CSW01_17625at 621.999 kb on - strand, within CSW01_17625at 622.103 kb on - strand, within CSW01_17625at 622.195 kb on + strand, within CSW01_17625at 622.205 kb on + strand, within CSW01_17625at 622.420 kb on + strand, within CSW01_17625at 622.610 kb on - strand, within CSW01_17625at 622.634 kb on - strand, within CSW01_17625at 622.685 kb on + strand, within CSW01_17625at 622.763 kb on + strandat 622.770 kb on + strandat 622.788 kb on - strandat 622.788 kb on - strandat 622.788 kb on - strandat 622.788 kb on - strandat 623.093 kb on + strand, within CSW01_17630at 623.133 kb on + strand, within CSW01_17630at 623.180 kb on + strand, within CSW01_17630at 623.188 kb on + strand, within CSW01_17630at 623.190 kb on + strand, within CSW01_17630at 623.196 kb on - strand, within CSW01_17630at 623.256 kb on - strand, within CSW01_17630at 623.262 kb on + strand, within CSW01_17630at 623.324 kb on - strand, within CSW01_17630at 623.364 kb on + strand, within CSW01_17630at 623.394 kb on + strand, within CSW01_17630at 623.577 kb on - strand, within CSW01_17630at 623.610 kb on - strand, within CSW01_17630at 623.638 kb on + strand, within CSW01_17630at 623.638 kb on + strand, within CSW01_17630at 623.646 kb on - strand, within CSW01_17630at 623.658 kb on - strand, within CSW01_17630at 623.748 kb on - strand, within CSW01_17630at 623.877 kb on + strand, within CSW01_17630at 623.896 kb on + strandat 623.904 kb on - strandat 623.911 kb on + strandat 623.920 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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619,975 + CSW01_17620 0.28 -0.2
620,002 + CSW01_17620 0.31 +0.1
620,058 - CSW01_17620 0.36 -0.6
620,087 + CSW01_17620 0.39 -1.2
620,095 - CSW01_17620 0.40 -1.2
620,103 - CSW01_17620 0.41 +1.0
620,206 + CSW01_17620 0.51 -1.7
620,241 + CSW01_17620 0.54 -0.9
620,336 - CSW01_17620 0.63 -0.5
620,336 - CSW01_17620 0.63 +2.3
620,346 - CSW01_17620 0.64 -1.3
620,379 + CSW01_17620 0.67 +0.5
620,379 + CSW01_17620 0.67 -1.7
620,397 - CSW01_17620 0.69 +0.7
620,397 - CSW01_17620 0.69 +1.5
620,410 - CSW01_17620 0.70 -2.8
620,435 + CSW01_17620 0.73 +0.6
620,546 - CSW01_17620 0.83 -0.9
620,624 - +0.1
620,655 + +0.5
620,655 + -1.9
620,766 + +0.4
620,766 + -0.3
620,774 - -2.9
620,774 - -1.1
620,774 - +1.4
620,784 - -0.1
620,794 + -1.0
620,794 + -0.4
620,802 - +1.3
620,948 - +0.1
621,001 - -0.2
621,001 - +1.1
621,074 - CSW01_17625 0.12 +0.5
621,083 - CSW01_17625 0.13 -2.1
621,083 - CSW01_17625 0.13 -0.4
621,112 + CSW01_17625 0.14 +0.9
621,121 + CSW01_17625 0.14 +1.0
621,153 - CSW01_17625 0.16 +0.4
621,153 - CSW01_17625 0.16 +0.9
621,210 + CSW01_17625 0.19 -0.4
621,280 + CSW01_17625 0.22 -2.2
621,359 + CSW01_17625 0.26 -2.5
621,400 + CSW01_17625 0.28 -0.1
621,408 - CSW01_17625 0.28 -1.8
621,414 - CSW01_17625 0.28 -2.9
621,440 - CSW01_17625 0.29 -1.0
621,594 - CSW01_17625 0.37 +0.5
621,628 - CSW01_17625 0.38 +0.3
621,677 + CSW01_17625 0.41 +0.3
621,685 - CSW01_17625 0.41 +1.3
621,743 - CSW01_17625 0.44 +1.3
621,827 + CSW01_17625 0.48 +1.5
621,827 + CSW01_17625 0.48 +1.0
621,827 + CSW01_17625 0.48 -0.5
621,827 + CSW01_17625 0.48 -0.3
621,835 - CSW01_17625 0.48 -0.1
621,835 - CSW01_17625 0.48 -1.0
621,900 + CSW01_17625 0.51 -0.2
621,921 - CSW01_17625 0.52 +2.0
621,982 + CSW01_17625 0.55 +1.8
621,999 - CSW01_17625 0.56 +0.3
622,103 - CSW01_17625 0.61 +0.2
622,195 + CSW01_17625 0.65 +0.7
622,205 + CSW01_17625 0.66 -0.6
622,420 + CSW01_17625 0.76 -2.3
622,610 - CSW01_17625 0.85 -0.4
622,634 - CSW01_17625 0.86 +0.7
622,685 + CSW01_17625 0.89 -1.4
622,763 + +0.3
622,770 + -0.8
622,788 - +0.6
622,788 - -0.5
622,788 - +1.8
622,788 - -0.0
623,093 + CSW01_17630 0.15 +2.3
623,133 + CSW01_17630 0.19 +0.5
623,180 + CSW01_17630 0.23 +0.8
623,188 + CSW01_17630 0.24 +0.1
623,190 + CSW01_17630 0.24 -1.7
623,196 - CSW01_17630 0.25 -1.9
623,256 - CSW01_17630 0.30 -1.8
623,262 + CSW01_17630 0.31 -0.1
623,324 - CSW01_17630 0.37 -1.0
623,364 + CSW01_17630 0.41 +1.1
623,394 + CSW01_17630 0.44 +0.7
623,577 - CSW01_17630 0.61 +2.0
623,610 - CSW01_17630 0.64 +0.0
623,638 + CSW01_17630 0.67 -2.8
623,638 + CSW01_17630 0.67 +0.0
623,646 - CSW01_17630 0.67 -0.5
623,658 - CSW01_17630 0.69 +0.5
623,748 - CSW01_17630 0.77 -0.2
623,877 + CSW01_17630 0.89 -0.6
623,896 + +0.0
623,904 - -1.6
623,911 + +0.8
623,920 + +1.1

Or see this region's nucleotide sequence