Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17480

Experiment: ICP3_phage_41.1_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17475 and CSW01_17480 are separated by 300 nucleotidesCSW01_17480 and CSW01_17485 are separated by 75 nucleotides CSW01_17475: CSW01_17475 - PTS maltose transporter subunit IIBC, at 585,232 to 586,671 _17475 CSW01_17480: CSW01_17480 - LacI family transcriptional regulator, at 586,972 to 587,964 _17480 CSW01_17485: CSW01_17485 - sucrose-6-phosphate hydrolase, at 588,040 to 589,686 _17485 Position (kb) 586 587 588Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 586.096 kb on - strand, within CSW01_17475at 586.096 kb on - strand, within CSW01_17475at 586.189 kb on + strand, within CSW01_17475at 586.198 kb on - strand, within CSW01_17475at 586.365 kb on + strand, within CSW01_17475at 586.367 kb on + strand, within CSW01_17475at 586.456 kb on - strand, within CSW01_17475at 586.483 kb on + strand, within CSW01_17475at 586.587 kb on - strandat 586.597 kb on + strandat 586.605 kb on - strandat 586.666 kb on + strandat 586.666 kb on + strandat 586.674 kb on - strandat 586.686 kb on - strandat 586.882 kb on + strandat 586.971 kb on - strandat 587.008 kb on + strandat 587.087 kb on - strand, within CSW01_17480at 587.194 kb on + strand, within CSW01_17480at 587.194 kb on + strand, within CSW01_17480at 587.253 kb on + strand, within CSW01_17480at 587.261 kb on - strand, within CSW01_17480at 587.261 kb on - strand, within CSW01_17480at 587.261 kb on - strand, within CSW01_17480at 587.261 kb on - strand, within CSW01_17480at 587.324 kb on + strand, within CSW01_17480at 587.324 kb on + strand, within CSW01_17480at 587.332 kb on - strand, within CSW01_17480at 587.389 kb on - strand, within CSW01_17480at 587.443 kb on - strand, within CSW01_17480at 587.473 kb on + strand, within CSW01_17480at 587.481 kb on - strand, within CSW01_17480at 587.481 kb on - strand, within CSW01_17480at 587.708 kb on + strand, within CSW01_17480at 587.716 kb on - strand, within CSW01_17480at 587.716 kb on - strand, within CSW01_17480at 587.732 kb on - strand, within CSW01_17480at 587.749 kb on - strand, within CSW01_17480at 587.902 kb on + strandat 588.035 kb on + strandat 588.093 kb on + strandat 588.103 kb on + strandat 588.213 kb on - strand, within CSW01_17485at 588.213 kb on - strand, within CSW01_17485at 588.213 kb on - strand, within CSW01_17485at 588.213 kb on - strand, within CSW01_17485at 588.215 kb on + strand, within CSW01_17485at 588.283 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.306 kb on + strand, within CSW01_17485at 588.306 kb on + strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.346 kb on - strand, within CSW01_17485at 588.348 kb on + strand, within CSW01_17485at 588.439 kb on + strand, within CSW01_17485at 588.500 kb on + strand, within CSW01_17485at 588.645 kb on + strand, within CSW01_17485at 588.698 kb on - strand, within CSW01_17485at 588.787 kb on + strand, within CSW01_17485at 588.795 kb on - strand, within CSW01_17485at 588.795 kb on - strand, within CSW01_17485at 588.810 kb on + strand, within CSW01_17485at 588.846 kb on + strand, within CSW01_17485at 588.854 kb on - strand, within CSW01_17485at 588.870 kb on - strand, within CSW01_17485at 588.890 kb on + strand, within CSW01_17485at 588.898 kb on - strand, within CSW01_17485at 588.898 kb on - strand, within CSW01_17485at 588.898 kb on - strand, within CSW01_17485at 588.943 kb on - strand, within CSW01_17485at 588.964 kb on + strand, within CSW01_17485

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
remove
586,096 - CSW01_17475 0.60 +1.7
586,096 - CSW01_17475 0.60 -0.8
586,189 + CSW01_17475 0.66 -1.5
586,198 - CSW01_17475 0.67 -2.3
586,365 + CSW01_17475 0.79 +2.2
586,367 + CSW01_17475 0.79 +0.2
586,456 - CSW01_17475 0.85 +1.0
586,483 + CSW01_17475 0.87 -0.6
586,587 - -0.6
586,597 + +0.9
586,605 - -0.0
586,666 + +0.1
586,666 + +0.3
586,674 - -1.1
586,686 - +1.0
586,882 + -0.6
586,971 - -1.1
587,008 + +0.8
587,087 - CSW01_17480 0.12 +0.7
587,194 + CSW01_17480 0.22 -0.0
587,194 + CSW01_17480 0.22 -0.7
587,253 + CSW01_17480 0.28 +0.6
587,261 - CSW01_17480 0.29 +0.9
587,261 - CSW01_17480 0.29 -1.8
587,261 - CSW01_17480 0.29 +1.7
587,261 - CSW01_17480 0.29 +0.6
587,324 + CSW01_17480 0.35 +0.5
587,324 + CSW01_17480 0.35 +1.0
587,332 - CSW01_17480 0.36 -0.5
587,389 - CSW01_17480 0.42 +0.4
587,443 - CSW01_17480 0.47 -0.9
587,473 + CSW01_17480 0.50 +1.0
587,481 - CSW01_17480 0.51 -0.7
587,481 - CSW01_17480 0.51 +0.4
587,708 + CSW01_17480 0.74 +1.3
587,716 - CSW01_17480 0.75 +0.6
587,716 - CSW01_17480 0.75 -1.5
587,732 - CSW01_17480 0.77 -3.2
587,749 - CSW01_17480 0.78 +1.2
587,902 + -0.1
588,035 + -0.1
588,093 + +0.2
588,103 + -2.7
588,213 - CSW01_17485 0.11 -0.8
588,213 - CSW01_17485 0.11 -0.0
588,213 - CSW01_17485 0.11 +0.8
588,213 - CSW01_17485 0.11 +1.6
588,215 + CSW01_17485 0.11 +0.1
588,283 + CSW01_17485 0.15 +1.2
588,301 + CSW01_17485 0.16 +0.6
588,301 + CSW01_17485 0.16 -0.4
588,301 + CSW01_17485 0.16 +0.4
588,301 + CSW01_17485 0.16 -1.0
588,301 + CSW01_17485 0.16 +1.7
588,301 + CSW01_17485 0.16 -2.6
588,301 + CSW01_17485 0.16 +0.2
588,301 + CSW01_17485 0.16 +1.0
588,306 + CSW01_17485 0.16 -0.6
588,306 + CSW01_17485 0.16 +0.3
588,309 - CSW01_17485 0.16 +0.3
588,309 - CSW01_17485 0.16 -0.3
588,309 - CSW01_17485 0.16 -1.2
588,309 - CSW01_17485 0.16 +0.8
588,309 - CSW01_17485 0.16 -2.4
588,309 - CSW01_17485 0.16 -2.3
588,309 - CSW01_17485 0.16 -1.0
588,309 - CSW01_17485 0.16 -1.5
588,309 - CSW01_17485 0.16 -1.5
588,309 - CSW01_17485 0.16 +1.3
588,346 - CSW01_17485 0.19 -0.8
588,348 + CSW01_17485 0.19 -0.3
588,439 + CSW01_17485 0.24 -0.8
588,500 + CSW01_17485 0.28 +0.4
588,645 + CSW01_17485 0.37 -1.6
588,698 - CSW01_17485 0.40 -0.1
588,787 + CSW01_17485 0.45 +0.8
588,795 - CSW01_17485 0.46 +0.9
588,795 - CSW01_17485 0.46 -1.9
588,810 + CSW01_17485 0.47 +0.8
588,846 + CSW01_17485 0.49 +0.5
588,854 - CSW01_17485 0.49 -0.3
588,870 - CSW01_17485 0.50 +0.8
588,890 + CSW01_17485 0.52 -0.3
588,898 - CSW01_17485 0.52 +0.6
588,898 - CSW01_17485 0.52 +0.1
588,898 - CSW01_17485 0.52 +1.5
588,943 - CSW01_17485 0.55 -2.5
588,964 + CSW01_17485 0.56 +1.2

Or see this region's nucleotide sequence