Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17460

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17450 and CSW01_17455 overlap by 1 nucleotidesCSW01_17455 and CSW01_17460 are separated by 88 nucleotidesCSW01_17460 and CSW01_17465 overlap by 4 nucleotidesCSW01_17465 and CSW01_17470 are separated by 271 nucleotides CSW01_17450: CSW01_17450 - hypothetical protein, at 581,266 to 582,012 _17450 CSW01_17455: CSW01_17455 - hypothetical protein, at 582,012 to 582,554 _17455 CSW01_17460: CSW01_17460 - D-alanine--D-alanine ligase, at 582,643 to 583,779 _17460 CSW01_17465: CSW01_17465 - DedA family protein, at 583,776 to 584,357 _17465 CSW01_17470: CSW01_17470 - DUF3069 domain-containing protein, at 584,629 to 585,066 _17470 Position (kb) 582 583 584Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 581.648 kb on - strand, within CSW01_17450at 581.849 kb on - strand, within CSW01_17450at 581.860 kb on + strand, within CSW01_17450at 581.918 kb on + strand, within CSW01_17450at 582.018 kb on - strandat 582.139 kb on - strand, within CSW01_17455at 582.149 kb on - strand, within CSW01_17455at 582.161 kb on - strand, within CSW01_17455at 582.161 kb on - strand, within CSW01_17455at 582.220 kb on - strand, within CSW01_17455at 582.230 kb on - strand, within CSW01_17455at 582.286 kb on - strand, within CSW01_17455at 582.345 kb on + strand, within CSW01_17455at 582.353 kb on - strand, within CSW01_17455at 582.353 kb on - strand, within CSW01_17455at 582.353 kb on - strand, within CSW01_17455at 582.353 kb on - strand, within CSW01_17455at 582.353 kb on - strand, within CSW01_17455at 582.406 kb on - strand, within CSW01_17455at 582.416 kb on + strand, within CSW01_17455at 582.443 kb on - strand, within CSW01_17455at 582.487 kb on - strand, within CSW01_17455at 582.487 kb on - strand, within CSW01_17455at 582.616 kb on - strandat 582.648 kb on - strandat 582.669 kb on - strandat 582.781 kb on - strand, within CSW01_17460at 582.863 kb on - strand, within CSW01_17460at 583.068 kb on - strand, within CSW01_17460at 583.097 kb on + strand, within CSW01_17460at 583.163 kb on - strand, within CSW01_17460at 583.164 kb on + strand, within CSW01_17460at 583.260 kb on - strand, within CSW01_17460at 583.353 kb on + strand, within CSW01_17460at 583.429 kb on - strand, within CSW01_17460at 583.439 kb on + strand, within CSW01_17460at 583.489 kb on - strand, within CSW01_17460at 583.525 kb on + strand, within CSW01_17460at 583.624 kb on - strand, within CSW01_17460at 583.783 kb on - strandat 583.850 kb on + strand, within CSW01_17465at 583.905 kb on - strand, within CSW01_17465at 583.965 kb on - strand, within CSW01_17465at 583.965 kb on - strand, within CSW01_17465at 584.064 kb on - strand, within CSW01_17465at 584.149 kb on + strand, within CSW01_17465at 584.203 kb on + strand, within CSW01_17465at 584.215 kb on + strand, within CSW01_17465at 584.253 kb on - strand, within CSW01_17465at 584.327 kb on - strandat 584.330 kb on - strandat 584.394 kb on - strandat 584.533 kb on + strandat 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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581,648 - CSW01_17450 0.51 -0.0
581,849 - CSW01_17450 0.78 +1.7
581,860 + CSW01_17450 0.80 -2.9
581,918 + CSW01_17450 0.87 +1.0
582,018 - +1.4
582,139 - CSW01_17455 0.23 +0.2
582,149 - CSW01_17455 0.25 -3.8
582,161 - CSW01_17455 0.27 -1.0
582,161 - CSW01_17455 0.27 -0.1
582,220 - CSW01_17455 0.38 -1.5
582,230 - CSW01_17455 0.40 -0.2
582,286 - CSW01_17455 0.50 -0.4
582,345 + CSW01_17455 0.61 -0.3
582,353 - CSW01_17455 0.63 +1.4
582,353 - CSW01_17455 0.63 +1.4
582,353 - CSW01_17455 0.63 +0.5
582,353 - CSW01_17455 0.63 -2.3
582,353 - CSW01_17455 0.63 -1.8
582,406 - CSW01_17455 0.73 +1.7
582,416 + CSW01_17455 0.74 -1.5
582,443 - CSW01_17455 0.79 +0.9
582,487 - CSW01_17455 0.87 -3.6
582,487 - CSW01_17455 0.87 -1.1
582,616 - -3.3
582,648 - -1.3
582,669 - -3.0
582,781 - CSW01_17460 0.12 -0.1
582,863 - CSW01_17460 0.19 -1.0
583,068 - CSW01_17460 0.37 +1.3
583,097 + CSW01_17460 0.40 -0.3
583,163 - CSW01_17460 0.46 -1.3
583,164 + CSW01_17460 0.46 -1.7
583,260 - CSW01_17460 0.54 +1.5
583,353 + CSW01_17460 0.62 +0.9
583,429 - CSW01_17460 0.69 -0.3
583,439 + CSW01_17460 0.70 +1.5
583,489 - CSW01_17460 0.74 +0.4
583,525 + CSW01_17460 0.78 -0.5
583,624 - CSW01_17460 0.86 +0.9
583,783 - +1.0
583,850 + CSW01_17465 0.13 -1.0
583,905 - CSW01_17465 0.22 -2.0
583,965 - CSW01_17465 0.32 +0.6
583,965 - CSW01_17465 0.32 +0.8
584,064 - CSW01_17465 0.49 -3.2
584,149 + CSW01_17465 0.64 +1.0
584,203 + CSW01_17465 0.73 -1.9
584,215 + CSW01_17465 0.75 +0.4
584,253 - CSW01_17465 0.82 +0.4
584,327 - +1.1
584,330 - +1.7
584,394 - -0.1
584,533 + +1.0
584,681 + CSW01_17470 0.12 -0.2
584,681 + CSW01_17470 0.12 +1.5
584,681 + CSW01_17470 0.12 -2.7
584,681 + CSW01_17470 0.12 +0.8
584,681 + CSW01_17470 0.12 +0.0
584,681 + CSW01_17470 0.12 -2.4
584,681 + CSW01_17470 0.12 -1.4
584,681 + CSW01_17470 0.12 -0.3
584,681 + CSW01_17470 0.12 -2.4
584,681 + CSW01_17470 0.12 -0.2
584,681 + CSW01_17470 0.12 +1.3
584,689 - CSW01_17470 0.14 -0.0
584,689 - CSW01_17470 0.14 -0.8
584,689 - CSW01_17470 0.14 +0.2
584,689 - CSW01_17470 0.14 -1.5
584,689 - CSW01_17470 0.14 -0.6
584,689 - CSW01_17470 0.14 -2.9
584,689 - CSW01_17470 0.14 +1.1

Or see this region's nucleotide sequence