Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17450

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17440 and CSW01_17445 overlap by 4 nucleotidesCSW01_17445 and CSW01_17450 are separated by 10 nucleotidesCSW01_17450 and CSW01_17455 overlap by 1 nucleotidesCSW01_17455 and CSW01_17460 are separated by 88 nucleotides CSW01_17440: CSW01_17440 - hemolysin, at 579,067 to 580,812 _17440 CSW01_17445: CSW01_17445 - YHS domain-containing protein, at 580,809 to 581,255 _17445 CSW01_17450: CSW01_17450 - hypothetical protein, at 581,266 to 582,012 _17450 CSW01_17455: CSW01_17455 - hypothetical protein, at 582,012 to 582,554 _17455 CSW01_17460: CSW01_17460 - D-alanine--D-alanine ligase, at 582,643 to 583,779 _17460 Position (kb) 581 582 583Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 580.328 kb on + strand, within CSW01_17440at 580.411 kb on + strand, within CSW01_17440at 580.430 kb on + strand, within CSW01_17440at 580.438 kb on - strand, within CSW01_17440at 580.438 kb on - strand, within CSW01_17440at 580.438 kb on - strand, within CSW01_17440at 580.448 kb on + strand, within CSW01_17440at 580.453 kb on + strand, within CSW01_17440at 580.478 kb on + strand, within CSW01_17440at 580.478 kb on + strand, within CSW01_17440at 580.587 kb on + strand, within CSW01_17440at 580.595 kb on - strand, within CSW01_17440at 580.606 kb on + strand, within CSW01_17440at 580.619 kb on - strand, within CSW01_17440at 580.619 kb on - strand, within CSW01_17440at 580.653 kb on + strandat 580.653 kb on + strandat 580.653 kb on + strandat 580.653 kb on + strandat 580.661 kb on - strandat 580.661 kb on - strandat 580.674 kb on + strandat 580.712 kb on - strandat 580.743 kb on + strandat 580.809 kb on - strandat 580.842 kb on - strandat 580.918 kb on + strand, within CSW01_17445at 580.985 kb on + strand, within CSW01_17445at 581.061 kb on + strand, within CSW01_17445at 581.088 kb on - strand, within CSW01_17445at 581.100 kb on - strand, within CSW01_17445at 581.100 kb on - strand, within CSW01_17445at 581.100 kb on - strand, within CSW01_17445at 581.119 kb on + strand, within CSW01_17445at 581.160 kb on - strand, within CSW01_17445at 581.239 kb on - strandat 581.329 kb on + strandat 581.370 kb on + strand, within CSW01_17450at 581.381 kb on + strand, within CSW01_17450at 581.381 kb on + strand, within CSW01_17450at 581.381 kb on + strand, within CSW01_17450at 581.381 kb on + strand, within CSW01_17450at 581.391 kb on + strand, within CSW01_17450at 581.399 kb on - strand, within CSW01_17450at 581.455 kb on - strand, within CSW01_17450at 581.512 kb on - strand, within CSW01_17450at 581.524 kb on - strand, within CSW01_17450at 581.524 kb on - strand, within CSW01_17450at 581.526 kb on + strand, within CSW01_17450at 581.536 kb on + strand, within CSW01_17450at 581.584 kb on + strand, within CSW01_17450at 581.584 kb on + strand, within CSW01_17450at 581.584 kb on + strand, within CSW01_17450at 581.592 kb on - strand, within CSW01_17450at 581.621 kb on - strand, within CSW01_17450at 581.631 kb on - strand, within CSW01_17450at 581.648 kb on - strand, within CSW01_17450at 581.849 kb on - strand, within CSW01_17450at 581.860 kb on + strand, within CSW01_17450at 581.918 kb on + strand, within CSW01_17450at 582.018 kb on - strandat 582.139 kb on - strand, within CSW01_17455at 582.149 kb on - strand, within CSW01_17455at 582.161 kb on - strand, within CSW01_17455at 582.161 kb on - strand, within CSW01_17455at 582.220 kb on - strand, within CSW01_17455at 582.230 kb on - strand, within CSW01_17455at 582.286 kb on - strand, within CSW01_17455at 582.345 kb on + strand, within CSW01_17455at 582.353 kb on - strand, within CSW01_17455at 582.353 kb on - strand, within CSW01_17455at 582.353 kb on - strand, within CSW01_17455at 582.353 kb on - strand, within CSW01_17455at 582.353 kb on - strand, within CSW01_17455at 582.406 kb on - strand, within CSW01_17455at 582.416 kb on + strand, within CSW01_17455at 582.443 kb on - strand, within CSW01_17455at 582.487 kb on - strand, within CSW01_17455at 582.487 kb on - strand, within CSW01_17455at 582.616 kb on - strandat 582.648 kb on - strandat 582.669 kb on - strandat 582.781 kb on - strand, within CSW01_17460at 582.863 kb on - strand, within CSW01_17460

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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580,328 + CSW01_17440 0.72 -2.8
580,411 + CSW01_17440 0.77 -2.1
580,430 + CSW01_17440 0.78 +1.7
580,438 - CSW01_17440 0.79 -0.8
580,438 - CSW01_17440 0.79 -0.7
580,438 - CSW01_17440 0.79 +0.6
580,448 + CSW01_17440 0.79 -1.8
580,453 + CSW01_17440 0.79 +0.8
580,478 + CSW01_17440 0.81 -0.7
580,478 + CSW01_17440 0.81 +0.4
580,587 + CSW01_17440 0.87 -1.5
580,595 - CSW01_17440 0.88 +1.3
580,606 + CSW01_17440 0.88 -1.2
580,619 - CSW01_17440 0.89 -0.4
580,619 - CSW01_17440 0.89 +1.0
580,653 + +1.2
580,653 + -2.4
580,653 + +0.2
580,653 + +0.6
580,661 - +0.8
580,661 - +1.6
580,674 + -2.1
580,712 - +0.1
580,743 + -0.5
580,809 - -0.1
580,842 - +1.1
580,918 + CSW01_17445 0.24 -0.2
580,985 + CSW01_17445 0.39 -0.6
581,061 + CSW01_17445 0.56 +0.8
581,088 - CSW01_17445 0.62 -1.0
581,100 - CSW01_17445 0.65 -2.2
581,100 - CSW01_17445 0.65 -0.3
581,100 - CSW01_17445 0.65 -1.7
581,119 + CSW01_17445 0.69 +0.4
581,160 - CSW01_17445 0.79 -0.0
581,239 - -0.9
581,329 + -2.2
581,370 + CSW01_17450 0.14 +1.4
581,381 + CSW01_17450 0.15 -2.2
581,381 + CSW01_17450 0.15 +0.7
581,381 + CSW01_17450 0.15 +1.0
581,381 + CSW01_17450 0.15 -1.8
581,391 + CSW01_17450 0.17 +0.8
581,399 - CSW01_17450 0.18 +0.8
581,455 - CSW01_17450 0.25 +1.7
581,512 - CSW01_17450 0.33 +0.1
581,524 - CSW01_17450 0.35 -0.1
581,524 - CSW01_17450 0.35 -2.5
581,526 + CSW01_17450 0.35 +1.0
581,536 + CSW01_17450 0.36 +0.3
581,584 + CSW01_17450 0.43 +0.4
581,584 + CSW01_17450 0.43 +0.3
581,584 + CSW01_17450 0.43 +0.3
581,592 - CSW01_17450 0.44 +0.8
581,621 - CSW01_17450 0.48 -1.5
581,631 - CSW01_17450 0.49 +0.0
581,648 - CSW01_17450 0.51 -0.0
581,849 - CSW01_17450 0.78 +1.7
581,860 + CSW01_17450 0.80 -2.9
581,918 + CSW01_17450 0.87 +1.0
582,018 - +1.4
582,139 - CSW01_17455 0.23 +0.2
582,149 - CSW01_17455 0.25 -3.8
582,161 - CSW01_17455 0.27 -1.0
582,161 - CSW01_17455 0.27 -0.1
582,220 - CSW01_17455 0.38 -1.5
582,230 - CSW01_17455 0.40 -0.2
582,286 - CSW01_17455 0.50 -0.4
582,345 + CSW01_17455 0.61 -0.3
582,353 - CSW01_17455 0.63 +1.4
582,353 - CSW01_17455 0.63 +1.4
582,353 - CSW01_17455 0.63 +0.5
582,353 - CSW01_17455 0.63 -2.3
582,353 - CSW01_17455 0.63 -1.8
582,406 - CSW01_17455 0.73 +1.7
582,416 + CSW01_17455 0.74 -1.5
582,443 - CSW01_17455 0.79 +0.9
582,487 - CSW01_17455 0.87 -3.6
582,487 - CSW01_17455 0.87 -1.1
582,616 - -3.3
582,648 - -1.3
582,669 - -3.0
582,781 - CSW01_17460 0.12 -0.1
582,863 - CSW01_17460 0.19 -1.0

Or see this region's nucleotide sequence