Experiment: ICP3_phage_41.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16865 and CSW01_16870 are separated by 466 nucleotides CSW01_16870 and CSW01_16875 are separated by 63 nucleotides
CSW01_16865: CSW01_16865 - ClC family H(+)/Cl(-) exchange transporter, at 457,679 to 459,085
_16865
CSW01_16870: CSW01_16870 - GTP-binding protein, at 459,552 to 460,541
_16870
CSW01_16875: CSW01_16875 - ribosome biogenesis GTPase YlqF, at 460,605 to 461,549
_16875
Position (kb) 459
460
461 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 458.638 kb on + strand, within CSW01_16865 at 458.638 kb on + strand, within CSW01_16865 at 458.646 kb on - strand, within CSW01_16865 at 458.646 kb on - strand, within CSW01_16865 at 458.662 kb on + strand, within CSW01_16865 at 458.912 kb on - strand, within CSW01_16865 at 458.937 kb on - strand, within CSW01_16865 at 459.068 kb on + strand at 459.140 kb on + strand at 459.146 kb on - strand at 459.290 kb on + strand at 459.360 kb on + strand at 459.450 kb on + strand at 459.477 kb on + strand at 459.574 kb on + strand at 459.668 kb on - strand, within CSW01_16870 at 459.691 kb on - strand, within CSW01_16870 at 459.755 kb on - strand, within CSW01_16870 at 459.755 kb on - strand, within CSW01_16870 at 459.824 kb on - strand, within CSW01_16870 at 459.837 kb on + strand, within CSW01_16870 at 459.845 kb on - strand, within CSW01_16870 at 459.884 kb on + strand, within CSW01_16870 at 460.010 kb on - strand, within CSW01_16870 at 460.025 kb on + strand, within CSW01_16870 at 460.087 kb on + strand, within CSW01_16870 at 460.152 kb on + strand, within CSW01_16870 at 460.195 kb on + strand, within CSW01_16870 at 460.355 kb on + strand, within CSW01_16870 at 460.363 kb on - strand, within CSW01_16870 at 460.435 kb on + strand, within CSW01_16870 at 460.452 kb on - strand at 460.603 kb on + strand at 460.611 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1 remove 458,638 + CSW01_16865 0.68 +1.2 458,638 + CSW01_16865 0.68 +0.8 458,646 - CSW01_16865 0.69 +1.2 458,646 - CSW01_16865 0.69 +0.1 458,662 + CSW01_16865 0.70 -2.5 458,912 - CSW01_16865 0.88 +2.8 458,937 - CSW01_16865 0.89 -0.8 459,068 + +0.6 459,140 + +1.2 459,146 - +0.4 459,290 + +2.6 459,360 + +0.3 459,450 + +0.7 459,477 + +1.0 459,574 + -0.6 459,668 - CSW01_16870 0.12 +1.4 459,691 - CSW01_16870 0.14 +0.2 459,755 - CSW01_16870 0.21 +0.4 459,755 - CSW01_16870 0.21 -2.4 459,824 - CSW01_16870 0.27 +0.1 459,837 + CSW01_16870 0.29 +0.1 459,845 - CSW01_16870 0.30 -1.1 459,884 + CSW01_16870 0.34 -2.5 460,010 - CSW01_16870 0.46 -0.7 460,025 + CSW01_16870 0.48 -2.5 460,087 + CSW01_16870 0.54 -0.3 460,152 + CSW01_16870 0.61 -0.2 460,195 + CSW01_16870 0.65 -1.7 460,355 + CSW01_16870 0.81 -0.5 460,363 - CSW01_16870 0.82 -0.8 460,435 + CSW01_16870 0.89 -3.9 460,452 - -3.7 460,603 + -0.4 460,611 - -1.0
Or see this region's nucleotide sequence