Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16825

Experiment: ICP3_phage_41.1_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_16820 and CSW01_16825 are separated by 12 nucleotidesCSW01_16825 and CSW01_16830 are separated by 10 nucleotides CSW01_16820: CSW01_16820 - PTS fructose transporter subunit IIBC, at 443,342 to 445,084 _16820 CSW01_16825: CSW01_16825 - 1-phosphofructokinase, at 445,097 to 446,050 _16825 CSW01_16830: CSW01_16830 - bifunctional PTS fructose transporter subunit IIA/HPr protein, at 446,061 to 447,263 _16830 Position (kb) 445 446 447Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 444.259 kb on + strand, within CSW01_16820at 444.428 kb on + strand, within CSW01_16820at 444.450 kb on + strand, within CSW01_16820at 444.450 kb on + strand, within CSW01_16820at 444.471 kb on + strand, within CSW01_16820at 444.623 kb on + strand, within CSW01_16820at 444.623 kb on + strand, within CSW01_16820at 444.631 kb on - strand, within CSW01_16820at 444.631 kb on - strand, within CSW01_16820at 444.669 kb on - strand, within CSW01_16820at 444.669 kb on - strand, within CSW01_16820at 444.676 kb on - strand, within CSW01_16820at 444.770 kb on + strand, within CSW01_16820at 444.770 kb on + strand, within CSW01_16820at 444.775 kb on - strand, within CSW01_16820at 444.932 kb on + strandat 444.938 kb on + strandat 444.951 kb on - strandat 444.955 kb on + strandat 445.088 kb on + strandat 445.096 kb on - strandat 445.154 kb on - strandat 445.174 kb on + strandat 445.177 kb on - strandat 445.234 kb on - strand, within CSW01_16825at 445.265 kb on + strand, within CSW01_16825at 445.268 kb on - strand, within CSW01_16825at 445.273 kb on - strand, within CSW01_16825at 445.273 kb on - strand, within CSW01_16825at 445.273 kb on - strand, within CSW01_16825at 445.456 kb on + strand, within CSW01_16825at 445.556 kb on - strand, within CSW01_16825at 445.594 kb on + strand, within CSW01_16825at 445.599 kb on + strand, within CSW01_16825at 445.607 kb on - strand, within CSW01_16825at 445.607 kb on - strand, within CSW01_16825at 445.612 kb on - strand, within CSW01_16825at 445.671 kb on - strand, within CSW01_16825at 445.714 kb on + strand, within CSW01_16825at 445.752 kb on - strand, within CSW01_16825at 445.823 kb on - strand, within CSW01_16825at 445.918 kb on + strand, within CSW01_16825at 445.985 kb on - strandat 445.995 kb on - strandat 445.995 kb on - strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.058 kb on + strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.066 kb on - strandat 446.078 kb on - strandat 446.225 kb on + strand, within CSW01_16830at 446.266 kb on + strand, within CSW01_16830at 446.335 kb on - strand, within CSW01_16830at 446.437 kb on + strand, within CSW01_16830at 446.464 kb on + strand, within CSW01_16830at 446.510 kb on + strand, within CSW01_16830at 446.510 kb on + strand, within CSW01_16830at 446.510 kb on + strand, within CSW01_16830at 446.510 kb on + strand, within CSW01_16830at 446.518 kb on + strand, within CSW01_16830at 446.518 kb on - strand, within CSW01_16830at 446.518 kb on - strand, within CSW01_16830at 446.520 kb on + strand, within CSW01_16830at 446.526 kb on - strand, within CSW01_16830at 446.526 kb on - strand, within CSW01_16830at 446.526 kb on - strand, within CSW01_16830at 446.542 kb on + strand, within CSW01_16830at 446.557 kb on + strand, within CSW01_16830at 446.756 kb on + strand, within CSW01_16830at 446.766 kb on + strand, within CSW01_16830at 446.766 kb on + strand, within CSW01_16830at 446.810 kb on - strand, within CSW01_16830at 446.834 kb on + strand, within CSW01_16830at 446.915 kb on + strand, within CSW01_16830at 446.925 kb on - strand, within CSW01_16830at 446.930 kb on + strand, within CSW01_16830at 446.938 kb on - strand, within CSW01_16830at 446.938 kb on - strand, within CSW01_16830at 447.001 kb on + strand, within CSW01_16830at 447.024 kb on + strand, within CSW01_16830at 447.032 kb on - strand, within CSW01_16830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
remove
444,259 + CSW01_16820 0.53 +1.6
444,428 + CSW01_16820 0.62 +1.7
444,450 + CSW01_16820 0.64 -0.7
444,450 + CSW01_16820 0.64 +1.4
444,471 + CSW01_16820 0.65 +0.8
444,623 + CSW01_16820 0.73 -0.2
444,623 + CSW01_16820 0.73 -3.2
444,631 - CSW01_16820 0.74 -2.8
444,631 - CSW01_16820 0.74 +0.2
444,669 - CSW01_16820 0.76 -2.8
444,669 - CSW01_16820 0.76 +0.7
444,676 - CSW01_16820 0.77 -1.7
444,770 + CSW01_16820 0.82 -2.8
444,770 + CSW01_16820 0.82 +2.4
444,775 - CSW01_16820 0.82 +1.6
444,932 + -0.7
444,938 + -1.3
444,951 - -2.1
444,955 + +0.7
445,088 + +1.8
445,096 - +1.0
445,154 - -2.2
445,174 + +0.3
445,177 - +0.7
445,234 - CSW01_16825 0.14 -0.2
445,265 + CSW01_16825 0.18 -1.3
445,268 - CSW01_16825 0.18 -2.4
445,273 - CSW01_16825 0.18 +0.3
445,273 - CSW01_16825 0.18 +1.0
445,273 - CSW01_16825 0.18 -2.3
445,456 + CSW01_16825 0.38 -2.8
445,556 - CSW01_16825 0.48 -1.1
445,594 + CSW01_16825 0.52 -0.0
445,599 + CSW01_16825 0.53 -0.6
445,607 - CSW01_16825 0.53 -1.3
445,607 - CSW01_16825 0.53 -1.5
445,612 - CSW01_16825 0.54 -0.9
445,671 - CSW01_16825 0.60 +2.3
445,714 + CSW01_16825 0.65 +0.9
445,752 - CSW01_16825 0.69 -0.9
445,823 - CSW01_16825 0.76 -0.3
445,918 + CSW01_16825 0.86 +0.9
445,985 - -2.2
445,995 - -2.9
445,995 - -0.6
446,058 + -0.3
446,058 + -1.2
446,058 + +0.6
446,058 + -0.7
446,058 + -1.8
446,058 + -1.1
446,058 + +0.8
446,058 + +0.5
446,066 - -0.7
446,066 - +1.4
446,066 - -0.8
446,066 - +1.0
446,066 - +0.9
446,066 - -1.2
446,066 - +0.4
446,066 - -2.6
446,078 - +0.4
446,225 + CSW01_16830 0.14 -2.6
446,266 + CSW01_16830 0.17 +0.8
446,335 - CSW01_16830 0.23 -2.1
446,437 + CSW01_16830 0.31 -2.7
446,464 + CSW01_16830 0.33 -0.4
446,510 + CSW01_16830 0.37 -0.1
446,510 + CSW01_16830 0.37 -1.9
446,510 + CSW01_16830 0.37 +0.4
446,510 + CSW01_16830 0.37 -2.9
446,518 + CSW01_16830 0.38 +0.2
446,518 - CSW01_16830 0.38 +0.2
446,518 - CSW01_16830 0.38 +0.1
446,520 + CSW01_16830 0.38 +0.7
446,526 - CSW01_16830 0.39 +0.9
446,526 - CSW01_16830 0.39 +2.2
446,526 - CSW01_16830 0.39 +0.8
446,542 + CSW01_16830 0.40 -1.1
446,557 + CSW01_16830 0.41 -2.7
446,756 + CSW01_16830 0.58 +0.9
446,766 + CSW01_16830 0.59 +0.6
446,766 + CSW01_16830 0.59 -0.1
446,810 - CSW01_16830 0.62 +0.6
446,834 + CSW01_16830 0.64 -0.6
446,915 + CSW01_16830 0.71 +1.2
446,925 - CSW01_16830 0.72 +0.0
446,930 + CSW01_16830 0.72 +0.3
446,938 - CSW01_16830 0.73 -2.4
446,938 - CSW01_16830 0.73 +0.1
447,001 + CSW01_16830 0.78 +2.4
447,024 + CSW01_16830 0.80 +1.3
447,032 - CSW01_16830 0.81 -1.0

Or see this region's nucleotide sequence